View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_2 (Length: 661)
Name: NF18694_high_2
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 43614951 - 43614481
Alignment:
| Q |
1 |
tagagaataattaaaataatgtactacgtaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
43614951 |
tagagaataattaaaataatgtactacgtaccccaataatgaaagcataaaaatcttgaagatggttataaatgagaatattgctggcacggcttgtttc |
43614852 |
T |
|
| Q |
101 |
ctggaccatataataaagtattatgtcagggaaaaatcaagtaaaactataggaaagaaaaacagaacatatttatcaacattaccgttcaaatatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614851 |
ctggaccatataataaagtattatgtcagggaaaaatcaagtaaaactataggaaagaaaaacagaacatatttatcaacattaccgttcaaatatcaaa |
43614752 |
T |
|
| Q |
201 |
aataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgttaaacgcggccttggacagcaaagtca |
300 |
Q |
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| T |
43614751 |
aataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgttaaacgcggccttggacagcaaagtca |
43614652 |
T |
|
| Q |
301 |
tcccagaatatattaattgtagtataaacacagccaaatatggacctagttcacccatatttgacagtgaaaatgtatatgaataattgattacacctta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43614651 |
tcccagaatatattaattgtagtataaacacagccaaatatggacctagttcacccatatttgacagtgaaaatgtatatgaataattgattacacttta |
43614552 |
T |
|
| Q |
401 |
tgattttcaacaatatatcaagtgcatatatatagtctataattggctgtttagtccattctccaaaatgaaa |
473 |
Q |
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| T |
43614551 |
tgattttcaacaatatatcaagtgcata--tatagtctataattggctgtttagtccattctccaaaatgaaa |
43614481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 29 - 469
Target Start/End: Complemental strand, 43609612 - 43609172
Alignment:
| Q |
29 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttcctggaccatataataaagtattatgtca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
43609612 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgttactggcacggcttgtttcctggaccatataataaagtattacgtta |
43609513 |
T |
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| Q |
129 |
gggaaaaatcaagtaaaa-ctataggaaagaaaaacagaacatatttatcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctcca |
227 |
Q |
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| T |
43609512 |
gagaaaa-tcaagtaaaaactataggaaagaaaaacagaacatatttttcaacattacctttcaaatattaaagctaaagggaccatgataatggctcca |
43609414 |
T |
|
| Q |
228 |
atcagctgtctataaaaaacaaacacagatgttttcattcctccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattgtagtataa |
327 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
43609413 |
atcagttgtctataaaaaacaaacacatatgttttcattcctccgttaaacacagctttggataacaaagtcatcccagaatatattaattgtattataa |
43609314 |
T |
|
| Q |
328 |
acacagccaaatatggacctagttcacccatatttgacagtgaaaatgtatatgaataattgattacaccttatgattttcaacaatatatcaagtgcat |
427 |
Q |
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| T |
43609313 |
acacagccaaatatggacctagttcacccatatttgacagtgaaaatgtatatgaatgattgtttacaccttatgattttcatcaatatatcaagtgcat |
43609214 |
T |
|
| Q |
428 |
atatatagtctataattggctgtttagtccattctccaaaat |
469 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43609213 |
atatatagtctataattggctgtttagtccattctccaaaat |
43609172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 495 - 608
Target Start/End: Complemental strand, 43614485 - 43614372
Alignment:
| Q |
495 |
tgaaatatttatgctttgatgaatcacagtttgattagaaatctcagtggtgtatctattctcatagcactctaattttttaataattatttcatatagc |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614485 |
tgaaatatttatgctttgatgaatcacagtttgattagaaatctcagtggtgtatctattctcatagcactctaattttttaataattatttcatatagc |
43614386 |
T |
|
| Q |
595 |
atctaatctttcgg |
608 |
Q |
| |
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|||||||||||||| |
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| T |
43614385 |
atctaatctttcgg |
43614372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 158 - 395
Target Start/End: Complemental strand, 43603050 - 43602805
Alignment:
| Q |
158 |
aaaaacagaacatatttatcaacatt---accgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacaca |
254 |
Q |
| |
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| T |
43603050 |
aaaaacagatcatattt-tcaacattgttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatcagttgtctgtagaagacaaacaca |
43602952 |
T |
|
| Q |
255 |
gatgttttcattcctccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattgtagtataaacacagccaaatatggacctagttcac |
354 |
Q |
| |
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|| |||||||||||| |||||||| |||||||||||| ||| |||||||| | |||||||||||| | | | ||||| || ||||||||||||||||||| |
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| T |
43602951 |
gaggttttcattccttcgttaaacacggccttggacatcaaggtcatcccggcatatattaattgcattgttaacactgctaaatatggacctagttcac |
43602852 |
T |
|
| Q |
355 |
------ccatatttgacagtgaaaatgtatatgaataattgattaca |
395 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||| |
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| T |
43602851 |
tcatagtcatatttgacgatgaaaatgtatatgaatgattgattaca |
43602805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 516 - 608
Target Start/End: Complemental strand, 43609174 - 43609082
Alignment:
| Q |
516 |
aatcacagtttgattagaaatctcagtggtgtatctattctcatagcactctaattttttaataattatttcatatagcatctaatctttcgg |
608 |
Q |
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| T |
43609174 |
aatcacagtttgattagaaatctcagtggtgtatctattctcatagcactctaattttttaataattatttcatatagcatctaatctttcgg |
43609082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 43603203 - 43603120
Alignment:
| Q |
29 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatattactggcacggcttgtttcctggaccatata |
112 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||||| |
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|
| T |
43603203 |
tacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccatata |
43603120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 43602631 - 43602587
Alignment:
| Q |
516 |
aatcacagtttgattagaaatctcagtggtgtatctattctcata |
560 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||| ||||| |
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| T |
43602631 |
aatcacagtttgattagtaatctcagcggtgtatctattttcata |
43602587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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