View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_23 (Length: 218)
Name: NF18694_high_23
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 55370768 - 55370959
Alignment:
| Q |
19 |
gttcatgcattcatctctaaattctaatgatgagtttccatctaattatcacnnnnnnnnnnnnnccaatcttattactatcaataattcaactcattta |
118 |
Q |
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| T |
55370768 |
gttcatgcattcatctctaaattctaatgatgagtttccatctaattatcacaaaaaaacaaaaaccaatcttattactatcaataattcaactcattta |
55370867 |
T |
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| Q |
119 |
cttattctccattctcacaaaatctcaatccaccctttgtagaacttcatgtggttccattccaatccaatatcctttttccattgatgatg |
210 |
Q |
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| T |
55370868 |
cttattctccattctcacaaaatctcaatccaccctttgtagaacttcatgtggttccattccaatccaatatcctttttccattgatgatg |
55370959 |
T |
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