View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_6 (Length: 470)
Name: NF18694_high_6
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 38512220 - 38512642
Alignment:
| Q |
17 |
actaagctcacatgtgatgttgctggatcagtagtgtctttgatacaagtttgatgcaatttcaagagggtaatgctttgattgatgtatcatgatgtgt |
116 |
Q |
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| T |
38512220 |
actaagctcacatgtgatgttgctggatcagtagtgtctt------------gatgcaatttcaagagggtaatgctttga----tgtatcatgatgtgt |
38512303 |
T |
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| Q |
117 |
gattagggtcgtcatgtttatcatttgatcggatgaaagtgctcatcattcacatatattctgtataggccaatgatataagctatagaagcgagtcaag |
216 |
Q |
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| T |
38512304 |
gattagggtcgtcatgtttatcatttgatcggatgaaagtgctcatcattcgcatatattctgtataggccaatga-------tatagaagcgagtcaag |
38512396 |
T |
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| Q |
217 |
tttggcgccacatataagtttatttttatggttggaataagtgtgatatatgtgatttattgatatggtgcaagactaatttacttatacacattag--- |
313 |
Q |
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| T |
38512397 |
ttttgcgccacatataagtttatttttatggttggattaaatgtgatatatgtgatttattgatatgctgcaagactaatttacttatacacattagttt |
38512496 |
T |
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| Q |
314 |
annnnnnnnnnnnnnagggattatacacattagataaaacctcttaaatactcgtcaagagaaacactacttatccgaagattaat--aagtgtttttag |
411 |
Q |
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| T |
38512497 |
tttttttttttttttagggattatacacattagataaaacctcttaaatactcgtcaagagaaacactacttttccgaagatttataaaaatgtttttag |
38512596 |
T |
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| Q |
412 |
ttcggctctaaaagacatctttgaggttgcatcctcacctagatatt |
458 |
Q |
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| T |
38512597 |
ttcggctctaaaa-acatctttgaggttgcatcctcacctagatatt |
38512642 |
T |
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