View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_11 (Length: 373)
Name: NF18694_low_11
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 47639925 - 47640280
Alignment:
| Q |
18 |
atgagaacaagattggccaaggtggatttggtgtggtttataaggtaagaaatttgttggtgcaaactgcttgaaaaatgtttttaatatgctaaatttg |
117 |
Q |
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| T |
47639925 |
atgagaacaagattggccaaggtggatttggtgtggtttataaggtaagaaatttgttggtgcaaactgcttgaaaaatgtttttaatatgctaaatttg |
47640024 |
T |
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| Q |
118 |
aataaaatggactggtgtggtttataaaggaagtagtttgtttatgcaaaatgcttgacacatgtttttaatatgctatatttgagtaaattggtttatt |
217 |
Q |
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| T |
47640025 |
aataaaatggactggtgtggtttataaagtaagtagtttgtttatgcaaaatgcttgacacatgtttttaatatgctatatttgagtaaattggtttatt |
47640124 |
T |
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| Q |
218 |
cccatgtttgtgtttagggtgtccttcctaacggactagagatagctgtgaagaggttgtcgataacctccttgcagggagcaatagagttcaggaatga |
317 |
Q |
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| T |
47640125 |
cccatgtttgtgtttagggtgtccttcctaacggactagagatagctgtgaagaggttgtcgataacctccttgcagggagcaatagagttcaggaatga |
47640224 |
T |
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| Q |
318 |
agcttcccttgtagccaagcttcaacatagaaatttagtgagaatgtttggatttt |
373 |
Q |
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| T |
47640225 |
agcttcccttgtagccaagcttcaacatagaaatttagtgagaatgtttggatttt |
47640280 |
T |
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