View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_13 (Length: 317)
Name: NF18694_low_13
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 11998558 - 11998841
Alignment:
| Q |
17 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11998558 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcatactcaattttctaaatttcttctgaggagagctttataat |
11998657 |
T |
|
| Q |
117 |
aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11998658 |
aatatcctttgactttaaagcatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
11998757 |
T |
|
| Q |
217 |
gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcat |
300 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11998758 |
gaaattctcagcttctttaatctactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcat |
11998841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 12234136 - 12234335
Alignment:
| Q |
17 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||| || |||| ||||| |||| ||||||||||||||||||||||||| | |
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| T |
12234136 |
catctatttcaacttgctggttattctcatcaaccaaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatatt |
12234235 |
T |
|
| Q |
117 |
aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
216 |
Q |
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||||||| | ||| |||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
12234236 |
aatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcattcactgctttagccttccttaggaatttcttgtcttcaatatgg |
12234335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 12246557 - 12246278
Alignment:
| Q |
17 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat |
116 |
Q |
| |
|
||||||||||||| ||| || |||||||||| || ||||||||| || |||||||| || || |||| ||||||| ||| |||||||| | | |
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| T |
12246557 |
catctatttcaacctgctggtttttctcatcaagcaaatttgtggccacagcaattgcagattcgatcttctcgatttcttgtgaagagagcttcacatc |
12246458 |
T |
|
| Q |
117 |
aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
216 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||| ||||||||||| | |
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|
| T |
12246457 |
aatatcctttttctttaaagcatttcccattttgtaaatgtagtcatccaaagcattcactgctttggccttccttaggaatctctggtcttcaatat-g |
12246359 |
T |
|
| Q |
217 |
gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt |
297 |
Q |
| |
|
||||||||||| |||||||| || || || ||||||||| ||||| ||| ||||||||||| ||||||||||||||||| |
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|
| T |
12246358 |
aaaattctcagcctctttaattaatttgtttatttcttcacttgacaacctttctttgtaattagttattgtaatctcatt |
12246278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 7541243 - 7541518
Alignment:
| Q |
17 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||| ||||| | || |||| ||| ||||| |||| |||||||||||||||||| || | | | |
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| T |
7541243 |
catctatttcaacttgttggttattctcatcaatcaaattcgtggccttagcaattgtagattcaatcttctcaatttcttctgaggagagtttcaaatt |
7541342 |
T |
|
| Q |
117 |
aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
216 |
Q |
| |
|
|||||| ||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| | |
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|
| T |
7541343 |
aatatcatttttctttaaagcagttcccattttgtaaatgtagtcatccaatacattcactgctttggccttccttaggaatttcttgtcttcaata-cg |
7541441 |
T |
|
| Q |
217 |
gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct |
293 |
Q |
| |
|
| | ||||||||||||| ||| ||||||||||| || ||| |||| || ||||||| ||||||||| ||||||| |
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|
| T |
7541442 |
gtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatct |
7541518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 14702426 - 14702697
Alignment:
| Q |
17 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat |
116 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| || ||||||||| || |||| | ||||| |||| |||||| ||||| |||||||||| | |
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|
| T |
14702426 |
catctatttcaacctgctggttattctcatcaatcaaatttgtggccacagcaattgacaattcaatcttcttaatttccaatgaggtgagctttatatt |
14702525 |
T |
|
| Q |
117 |
aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
216 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||| |||||||||||| | |
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| T |
14702526 |
aatatcctttttcttcaaagcgtttctcattttgtaaatgaagtaatccaattcattcaccactttggccttccttaggaatttcatgtcttcaatat-g |
14702624 |
T |
|
| Q |
217 |
gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaa |
290 |
Q |
| |
|
| ||||||||||||||| ||| | | |||||||||| | ||||| ||| ||||||| ||||||||| |||| |
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|
| T |
14702625 |
gtaattctcagcttcttgaat-agccttttaatttccaaacttgacaacctttctttgtgattggttatcgtaa |
14702697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 12259707 - 12259535
Alignment:
| Q |
37 |
ttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataataatatcctt-tga--cttta |
133 |
Q |
| |
|
||||||||| || || ||||||||| ||| |||||||| ||||| |||| ||||||||||| ||||||||||| ||||||||| | | ||||| |
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|
| T |
12259707 |
ttattctcactaagcaaatttgtggccactgcaattgcagattcaatcttctcaatttcttctgtggagagctttacgttaatatcctcctcattcttta |
12259608 |
T |
|
| Q |
134 |
aagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtc |
206 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||| |||| | ||| |||||||||||||||| |
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|
| T |
12259607 |
aagcatttctcattttgtaaatgtaatcatccaatgcattcactgctttagatttctttaggaatttcttgtc |
12259535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 16663031 - 16662958
Alignment:
| Q |
129 |
ctttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttct |
202 |
Q |
| |
|
||||| || ||| |||| |||||||||| ||||||| |||||||||| | | |||||||||||||||||||| |
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|
| T |
16663031 |
ctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttct |
16662958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 52550080 - 52549805
Alignment:
| Q |
17 |
catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat |
116 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| ||| ||||| ||| |||||||| || || |||| ||||||||||||||||||||| | | | |
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|
| T |
52550080 |
catctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatttcttctgaggagagcttcaaatt |
52549981 |
T |
|
| Q |
117 |
aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg |
216 |
Q |
| |
|
|||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
52549980 |
aatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaatgcattccatggtttagccttccttaggaatttcttgtcttcaata-ca |
52549882 |
T |
|
| Q |
217 |
gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct |
293 |
Q |
| |
|
| ||||||||||||||| ||| || |||||||| || ||| ||||| ||| ||||||| |||||| |||||||||| |
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|
| T |
52549881 |
gtaattctcagcttcttgaattaattttttaatgtcctcacttgacaacctttctttgtgattggtaattgtaatct |
52549805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 6788733 - 6788817
Alignment:
| Q |
219 |
aattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcatatt |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
6788733 |
aattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatctcattcatatt |
6788817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 27849099 - 27849023
Alignment:
| Q |
221 |
ttctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt |
297 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| | ||| ||||||||||| || ||| |||||||||| |
|
|
| T |
27849099 |
ttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaattagtaattataatctcatt |
27849023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 17259458 - 17259533
Alignment:
| Q |
223 |
ctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattc |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| | || | ||| |||||| |||||||||||||||||||||| |
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|
| T |
17259458 |
ctcagcttctttaatcaatcttttaatttgttcagccgagaaccttcctttgtcattggttattgtaatctcattc |
17259533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 17267161 - 17267236
Alignment:
| Q |
223 |
ctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattc |
298 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||| | || | ||| |||||| |||||||||||||||||||||| |
|
|
| T |
17267161 |
ctcagcttctttaaccaatcttttaatttgttcagccgataaccttcctttgtcattggttattgtaatctcattc |
17267236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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