View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_15 (Length: 296)
Name: NF18694_low_15
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 42683419 - 42683218
Alignment:
| Q |
1 |
tcacgtgcaagctcaaattttgataacacccataaaagcaatcaacaagaacataaatccaataaagaaaaataaaattctaacctgaataggtgagaag |
100 |
Q |
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| T |
42683419 |
tcacgtgcaagctcaaattttgatgacacccataaaagcaatcaacaagaacataaatccaataaagaaaaataaaattctaacctgaataggtgagaag |
42683320 |
T |
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| Q |
101 |
tgctcagtgtagaatttgcgaaagaaatcgttgggacttgggagtttccgaatgaagatcagagcaaaaattttgaggttgcaaacaactcttaaacgca |
200 |
Q |
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| T |
42683319 |
ttctcagtgtagaatttgcgaaagaaatcgtt-------gggagtttccgaatgaagatcagagcaaaaattttgaggttgcaaacaactcttaaacgca |
42683227 |
T |
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| Q |
201 |
taccaattg |
209 |
Q |
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| T |
42683226 |
taccaattg |
42683218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 42683170 - 42683083
Alignment:
| Q |
207 |
ttggctggagaatagaaaaaggagtgtcaagaacaagctaaagatatagaacgcgagaattgagagcgattgacaacagacacctatg |
294 |
Q |
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| T |
42683170 |
ttggctggagaatagaaaaaggagtgtcaagaacaagataaagatatagaacgcgagaattgagagcgattgacaacagacacctatg |
42683083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 42686145 - 42686040
Alignment:
| Q |
1 |
tcacgtgcaagctcaaattttgataac-acccataaaagcaatcaaca---agaacataaatccaataaagaaaaataaaattctaacctgaataggtga |
96 |
Q |
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| T |
42686145 |
tcacatgcaagctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaaga-----aaaattctaacctgaataggtga |
42686051 |
T |
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| Q |
97 |
gaagtgctcag |
107 |
Q |
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| T |
42686050 |
gaagtgatcag |
42686040 |
T |
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Back To:
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