View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_19 (Length: 266)
Name: NF18694_low_19
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 12213347 - 12213092
Alignment:
| Q |
11 |
gaagaatattgaaagtaacagcttgagcagggaagaaaatgtgaccggatgttgccagggtgttaatggagtttcttgttgcagttttccaagtcctgct |
110 |
Q |
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| T |
12213347 |
gaagaatattgaaagtaacagcttgagcagggaagaaaatgtgaccggttgttgccagggtgttaatggagtttcttgttgcagttttccaaatcctgca |
12213248 |
T |
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| Q |
111 |
aaaaaagacgagattaaagagggcaaaagctgtaagatccggtctctattgaaggagcgtgatgttctcacagccgttggtgtgcttggagctgtggcgg |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12213247 |
aaaagagacgagattaaagagggcaaaagctgtaagatccggtctctattgaaggagcgtgatgttctcacagccgttggtgtgcttggagctggggcgg |
12213148 |
T |
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| Q |
211 |
ctgttgccgtggcttacaaactttacagaaggtcaggctgaattaggccctgataa |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
12213147 |
ctgttgccgtggcttacaaactttacagaaggtcaggctgaattaagctctgataa |
12213092 |
T |
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