View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_20 (Length: 256)
Name: NF18694_low_20
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 22897732 - 22897494
Alignment:
| Q |
1 |
tacttggatgaaaaactaaaattaaaagctttctttcagtctgactgcaatagggtagcacttactaccgattgttagacctctcttcaaaaccttaact |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22897732 |
tacttggatgaaaaactaaaattaaaagttttctttaagtctgactgcaatagggtagcacttactaccgattgttggacctctcttcaaaaccttaact |
22897633 |
T |
|
| Q |
101 |
acttgacccttatggcacattttgtggataatgattggaagtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtagg |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897632 |
acttgacccttacggcacattttgtggataatgattggaagtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtagg |
22897533 |
T |
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| Q |
201 |
taggaagattgaagaggtgttaagggattgggggattag |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22897532 |
taggaagattgaagaggtgttaagggattgggggattag |
22897494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16300235 - 16299997
Alignment:
| Q |
1 |
tacttggatgaaaaactaaaattaaaagctttctttcagtctgactgcaatagggtagcacttactaccgattgttagacctctcttcaaaaccttaact |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16300235 |
tacttggatgaaaaactaaaattaaaagatttctttaagtctgactgcaaaagggtagcacttactaccgattgttggacctctcttcaaaaccttaact |
16300136 |
T |
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| Q |
101 |
acttgacccttatggcacattttgtggataatgattggaagtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtagg |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300135 |
acttgacccttacggcacattttgtggataatgattggaagtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtagg |
16300036 |
T |
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| Q |
201 |
taggaagattgaagaggtgttaagggattgggggattag |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16300035 |
taggaagattgaagaggtgttaagggattgggggattag |
16299997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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