View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_22 (Length: 246)
Name: NF18694_low_22
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38398653 - 38398883
Alignment:
| Q |
1 |
aacccccaattcaatccaatattcaatatcaaaactaatgcattaattaaatgaaaaattatcacgacattattatttataacctacacaaatgaagaat |
100 |
Q |
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| T |
38398653 |
aacccccaattcaatccaatattcaatatcaaaactaatgcattaattaaatgaaaaattatcacgacattattatttataacctacacaaatgaagaat |
38398752 |
T |
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| Q |
101 |
attgtccaccccactataaggtccaataagaaaataaacgatataaacattaatacaattaaaattcactaaagaaatattaacacattggtcctcaaat |
200 |
Q |
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| T |
38398753 |
attgtccaccccactataaggtccaataagaaaataaacgatataaacattaatacaattaaaattcactaaagaaatattaacacattggtcctcaaat |
38398852 |
T |
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| Q |
201 |
ttaatgccaacataacctacaaggcatgaaa |
231 |
Q |
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||||||||||||||| ||||||||||||||| |
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| T |
38398853 |
ttaatgccaacataatctacaaggcatgaaa |
38398883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 41119129 - 41119083
Alignment:
| Q |
149 |
attaatacaattaaaattcactaaagaaatattaacacattggtcct |
195 |
Q |
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|||| |||||| ||||||||||||||||||||||||| || |||||| |
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| T |
41119129 |
attattacaatcaaaattcactaaagaaatattaacatatcggtcct |
41119083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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