View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_low_23 (Length: 244)
Name: NF18694_low_23
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43056184 - 43055959
Alignment:
| Q |
1 |
atcaggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttnnnnnnnnnnnnnnnnnnnncaatgacatgatgta |
100 |
Q |
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| T |
43056184 |
atcaggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttaaaaaataaaaatacaaaaacaatgacatgatgta |
43056085 |
T |
|
| Q |
101 |
aaacatgtatgagaattacccttcatactcgggaaataaataaagagcaatattcttgtcggttggtccatccttcttgaagctatcaggccaaacttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43056084 |
aaacatgtatgagaattacccttcatactcgggaaataaataaagagcaatattcttgttggttggtccatccttcttgaagctatcaggccaaacttct |
43055985 |
T |
|
| Q |
201 |
gatctgggtagcaaatctgccgaaag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43055984 |
gatctgggtagcaaatctgccgaaag |
43055959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 44805894 - 44805800
Alignment:
| Q |
132 |
ggaaataaataaagagcaatattcttgtcggttggtccatccttcttgaagctatcaggccaaacttctgatctgggtagcaaatctgccgaaag |
226 |
Q |
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||||| |||||||||||||| | | || |||||||| |||| ||||||||||| |||||| || || |||||||| ||||||||||| ||||| |
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| T |
44805894 |
ggaaagaaataaagagcaatgctttcatcagttggtccttcctccttgaagctattaggccacacctcagatctgggaagcaaatctgcggaaag |
44805800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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