View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18694_low_6 (Length: 542)

Name: NF18694_low_6
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18694_low_6
NF18694_low_6
[»] chr7 (41 HSPs)
chr7 (1-319)||(12212752-12213066)
chr7 (328-489)||(42254956-42255120)
chr7 (328-389)||(35212066-35212127)
chr7 (329-439)||(17066424-17066534)
chr7 (328-452)||(12385642-12385768)
chr7 (329-389)||(32197909-32197969)
chr7 (328-466)||(36749167-36749308)
chr7 (331-389)||(31489935-31489993)
chr7 (329-466)||(39619713-39619851)
chr7 (329-464)||(12933418-12933558)
chr7 (344-503)||(42255785-42255947)
chr7 (329-381)||(40576765-40576817)
chr7 (328-498)||(5610154-5610328)
chr7 (328-464)||(24195605-24195746)
chr7 (332-389)||(28462628-28462685)
chr7 (328-389)||(41693643-41693704)
chr7 (333-389)||(32544774-32544830)
chr7 (330-382)||(36748198-36748249)
chr7 (329-383)||(30513286-30513340)
chr7 (404-487)||(39618730-39618815)
chr7 (329-382)||(5611514-5611567)
chr7 (328-389)||(11217071-11217132)
chr7 (328-389)||(13418948-13419009)
chr7 (330-386)||(6589021-6589077)
chr7 (329-389)||(24197103-24197163)
chr7 (329-389)||(25046240-25046300)
chr7 (329-389)||(31848144-31848204)
chr7 (333-389)||(32543483-32543539)
chr7 (400-489)||(36748268-36748359)
chr7 (419-466)||(37784072-37784119)
chr7 (328-382)||(554243-554297)
chr7 (335-389)||(25037755-25037809)
chr7 (419-489)||(32543570-32543640)
chr7 (419-465)||(32544695-32544741)
chr7 (328-382)||(38742179-38742233)
chr7 (419-464)||(25037840-25037885)
chr7 (328-385)||(35837922-35837979)
chr7 (329-464)||(41694877-41695015)
chr7 (330-382)||(28528905-28528957)
chr7 (328-384)||(46304084-46304140)
chr7 (329-385)||(46759657-46759713)
[»] chr3 (44 HSPs)
chr3 (328-498)||(42447675-42447848)
chr3 (329-466)||(52403043-52403184)
chr3 (330-389)||(977846-977905)
chr3 (329-466)||(42446525-42446665)
chr3 (328-463)||(52401015-52401153)
chr3 (331-389)||(20489358-20489416)
chr3 (328-438)||(40477322-40477435)
chr3 (331-442)||(48035676-48035790)
chr3 (329-389)||(39820604-39820664)
chr3 (330-443)||(4705681-4705799)
chr3 (330-381)||(52708625-52708676)
chr3 (329-382)||(38505586-38505639)
chr3 (328-389)||(53121300-53121361)
chr3 (333-389)||(22508738-22508794)
chr3 (400-464)||(39819383-39819449)
chr3 (332-389)||(20488368-20488425)
chr3 (328-381)||(43734049-43734102)
chr3 (329-464)||(45268492-45268630)
chr3 (329-382)||(46026075-46026128)
chr3 (328-389)||(46027417-46027478)
chr3 (329-389)||(47433809-47433869)
chr3 (401-442)||(48033133-48033176)
chr3 (400-441)||(51004213-51004256)
chr3 (330-389)||(43641143-43641202)
chr3 (330-389)||(46104343-46104402)
chr3 (330-389)||(48033058-48033117)
chr3 (331-389)||(32637188-32637246)
chr3 (331-381)||(40476222-40476272)
chr3 (331-389)||(45267306-45267364)
chr3 (406-464)||(977767-977827)
chr3 (329-382)||(20585651-20585704)
chr3 (328-389)||(28942846-28942907)
chr3 (328-385)||(35639505-35639562)
chr3 (419-464)||(41780732-41780777)
chr3 (328-377)||(44506580-44506629)
chr3 (415-464)||(46027339-46027388)
chr3 (419-468)||(53632726-53632775)
chr3 (329-382)||(54437474-54437527)
chr3 (419-463)||(7208595-7208639)
chr3 (329-389)||(28427244-28427304)
chr3 (329-389)||(34238597-34238657)
chr3 (419-463)||(35639600-35639644)
chr3 (328-376)||(42444035-42444083)
chr3 (328-380)||(44507808-44507860)
[»] scaffold0009 (1 HSPs)
scaffold0009 (329-486)||(202578-202738)
[»] chr1 (36 HSPs)
chr1 (328-487)||(24611016-24611178)
chr1 (328-388)||(50164401-50164461)
chr1 (328-464)||(26863858-26863997)
chr1 (328-389)||(9774888-9774949)
chr1 (328-389)||(13074574-13074635)
chr1 (329-389)||(39163024-39163084)
chr1 (330-466)||(24609919-24610058)
chr1 (328-389)||(35911888-35911949)
chr1 (333-439)||(9774040-9774149)
chr1 (329-389)||(27264216-27264276)
chr1 (329-389)||(34934747-34934807)
chr1 (329-389)||(35721100-35721160)
chr1 (330-464)||(20722472-20722607)
chr1 (406-466)||(30722193-30722255)
chr1 (330-389)||(37396840-37396899)
chr1 (328-464)||(47038864-47039003)
chr1 (328-389)||(17977559-17977620)
chr1 (328-389)||(27262906-27262967)
chr1 (330-464)||(46074975-46075109)
chr1 (330-389)||(39162823-39162883)
chr1 (330-389)||(17976761-17976820)
chr1 (329-458)||(46073884-46074015)
chr1 (328-382)||(48588968-48589022)
chr1 (328-378)||(48594059-48594109)
chr1 (328-378)||(48598670-48598720)
chr1 (328-389)||(11710551-11710612)
chr1 (328-487)||(20723587-20723749)
chr1 (328-389)||(37395631-37395692)
chr1 (329-389)||(30724015-30724075)
chr1 (400-441)||(51240195-51240238)
chr1 (330-389)||(23469969-23470028)
chr1 (408-439)||(37545841-37545872)
chr1 (331-385)||(15058419-15058473)
chr1 (401-464)||(48856282-48856347)
chr1 (329-378)||(2604138-2604187)
chr1 (328-365)||(48153007-48153044)
[»] chr8 (32 HSPs)
chr8 (328-486)||(22534622-22534783)
chr8 (328-466)||(10292814-10292954)
chr8 (329-389)||(10717120-10717180)
chr8 (329-389)||(10718448-10718508)
chr8 (328-464)||(22533315-22533453)
chr8 (331-464)||(28996835-28996971)
chr8 (329-486)||(38658480-38658639)
chr8 (328-466)||(14197823-14197962)
chr8 (328-463)||(36588220-36588358)
chr8 (328-389)||(36589387-36589448)
chr8 (329-464)||(38456652-38456790)
chr8 (328-442)||(6783576-6783692)
chr8 (330-522)||(4183843-4184038)
chr8 (415-489)||(18326599-18326673)
chr8 (329-387)||(45517962-45518020)
chr8 (333-439)||(3484743-3484843)
chr8 (328-389)||(22272270-22272331)
chr8 (330-382)||(28998000-28998052)
chr8 (331-382)||(39440429-39440480)
chr8 (331-389)||(4182623-4182681)
chr8 (415-489)||(10293722-10293796)
chr8 (328-377)||(38659885-38659934)
chr8 (328-389)||(39439922-39439983)
chr8 (329-389)||(30124223-30124283)
chr8 (400-489)||(41846717-41846808)
chr8 (332-382)||(3483635-3483685)
chr8 (328-389)||(16643985-16644046)
chr8 (415-464)||(22271032-22271081)
chr8 (330-382)||(1420449-1420501)
chr8 (400-441)||(14711603-14711646)
chr8 (329-389)||(22270942-22271002)
chr8 (400-465)||(41357287-41357354)
[»] scaffold0106 (2 HSPs)
scaffold0106 (329-443)||(29728-29845)
scaffold0106 (329-389)||(30907-30967)
[»] chr4 (42 HSPs)
chr4 (329-452)||(19674413-19674538)
chr4 (329-463)||(45618284-45618420)
chr4 (328-464)||(3880419-3880557)
chr4 (330-442)||(19675566-19675679)
chr4 (401-498)||(29415623-29415722)
chr4 (328-464)||(16573376-16573514)
chr4 (329-464)||(54121622-54121760)
chr4 (328-382)||(34659704-34659758)
chr4 (329-464)||(3879085-3879227)
chr4 (333-389)||(17371845-17371901)
chr4 (329-389)||(41933817-41933877)
chr4 (419-487)||(41933910-41933978)
chr4 (333-381)||(41935078-41935126)
chr4 (330-389)||(22204055-22204114)
chr4 (400-464)||(42358103-42358169)
chr4 (330-389)||(42359346-42359405)
chr4 (330-466)||(32699234-32699373)
chr4 (415-484)||(32698081-32698150)
chr4 (329-382)||(33134890-33134943)
chr4 (328-389)||(33137228-33137289)
chr4 (419-464)||(41934991-41935036)
chr4 (406-463)||(29060804-29060863)
chr4 (329-389)||(30091055-30091115)
chr4 (400-489)||(45533364-45533455)
chr4 (328-389)||(40198575-40198633)
chr4 (328-382)||(5827921-5827975)
chr4 (328-382)||(13631547-13631601)
chr4 (328-362)||(31812181-31812215)
chr4 (328-362)||(42848025-42848059)
chr4 (329-382)||(4211560-4211613)
chr4 (328-369)||(5259171-5259212)
chr4 (329-382)||(12152441-12152494)
chr4 (329-382)||(14487801-14487854)
chr4 (332-381)||(16916069-16916118)
chr4 (328-389)||(17281569-17281630)
chr4 (328-389)||(17370071-17370132)
chr4 (328-389)||(29060882-29060943)
chr4 (419-464)||(34659798-34659843)
chr4 (333-385)||(29597747-29597799)
chr4 (341-389)||(44706364-44706412)
chr4 (329-389)||(45619731-45619791)
chr4 (330-382)||(46292392-46292444)
[»] scaffold0001 (2 HSPs)
scaffold0001 (330-389)||(120985-121044)
scaffold0001 (330-389)||(119593-119652)
[»] chr2 (24 HSPs)
chr2 (330-389)||(1778790-1778849)
chr2 (329-522)||(25977869-25978065)
chr2 (332-389)||(21573938-21573995)
chr2 (328-464)||(25979174-25979312)
chr2 (407-464)||(43824241-43824298)
chr2 (328-389)||(1777467-1777528)
chr2 (329-489)||(23861751-23861913)
chr2 (328-389)||(30843642-30843703)
chr2 (329-389)||(2412428-2412488)
chr2 (332-486)||(23862950-23863107)
chr2 (400-464)||(36836537-36836603)
chr2 (328-389)||(8809594-8809656)
chr2 (415-464)||(24749522-24749571)
chr2 (330-389)||(11087049-11087108)
chr2 (406-466)||(11087128-11087190)
chr2 (328-378)||(3924877-3924927)
chr2 (328-362)||(17302111-17302145)
chr2 (328-382)||(18113087-18113141)
chr2 (333-463)||(36837703-36837834)
chr2 (404-486)||(1590799-1590883)
chr2 (419-464)||(3924787-3924832)
chr2 (331-380)||(25282408-25282457)
chr2 (328-376)||(24754171-24754219)
chr2 (329-389)||(43788857-43788917)
[»] chr5 (21 HSPs)
chr5 (330-464)||(6893932-6894069)
chr5 (332-389)||(3205102-3205159)
chr5 (328-389)||(3936576-3936637)
chr5 (332-452)||(15603993-15604114)
chr5 (328-438)||(34911779-34911889)
chr5 (329-442)||(15599764-15599880)
chr5 (415-464)||(14809251-14809300)
chr5 (328-389)||(27571129-27571190)
chr5 (329-389)||(31540495-31540555)
chr5 (328-383)||(35604417-35604472)
chr5 (329-389)||(3938060-3938120)
chr5 (329-389)||(3954051-3954111)
chr5 (329-389)||(4565392-4565452)
chr5 (332-383)||(6044139-6044190)
chr5 (328-385)||(18258472-18258529)
chr5 (407-468)||(20416437-20416497)
chr5 (328-385)||(20660946-20661003)
chr5 (332-389)||(25254131-25254188)
chr5 (332-389)||(25317921-25317978)
chr5 (330-362)||(5103969-5104001)
chr5 (408-444)||(40167862-40167898)
[»] chr6 (23 HSPs)
chr6 (329-464)||(34998062-34998201)
chr6 (329-465)||(17517230-17517369)
chr6 (329-382)||(29291358-29291411)
chr6 (330-389)||(21165246-21165305)
chr6 (328-389)||(16995449-16995510)
chr6 (332-466)||(17516164-17516301)
chr6 (329-389)||(21953205-21953265)
chr6 (419-522)||(17000141-17000244)
chr6 (330-389)||(18810532-18810591)
chr6 (328-438)||(1171601-1171712)
chr6 (328-464)||(3279422-3279560)
chr6 (419-464)||(20896039-20896084)
chr6 (330-438)||(20897447-20897556)
chr6 (408-439)||(19275930-19275961)
chr6 (401-440)||(3276437-3276478)
chr6 (328-382)||(20391212-20391266)
chr6 (418-464)||(29291451-29291497)
chr6 (328-385)||(3276299-3276356)
chr6 (328-381)||(23502235-23502288)
chr6 (407-464)||(16995530-16995589)
chr6 (330-382)||(17000284-17000336)
chr6 (424-464)||(26419609-26419649)
chr6 (329-389)||(34995113-34995173)
[»] scaffold0002 (4 HSPs)
scaffold0002 (329-389)||(344936-344996)
scaffold0002 (329-377)||(376381-376429)
scaffold0002 (329-458)||(345826-345957)
scaffold0002 (330-522)||(374335-374529)
[»] scaffold0517 (2 HSPs)
scaffold0517 (330-389)||(10315-10374)
scaffold0517 (328-389)||(11522-11583)
[»] scaffold0562 (1 HSPs)
scaffold0562 (329-464)||(9921-10063)
[»] scaffold0230 (1 HSPs)
scaffold0230 (330-389)||(431-490)
[»] scaffold0095 (1 HSPs)
scaffold0095 (331-382)||(42762-42813)
[»] scaffold0765 (1 HSPs)
scaffold0765 (400-452)||(1931-1985)
[»] scaffold0516 (1 HSPs)
scaffold0516 (330-382)||(1142-1194)
[»] scaffold0326 (2 HSPs)
scaffold0326 (329-389)||(4040-4100)
scaffold0326 (329-389)||(19222-19282)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 12213066 - 12212752
Alignment:
Q  1 tattattttggtcgatatacaatgaagtaagaaataattacgaaaactagttatacgaagacttacatagacgctttattggtctgtcaaaggatagcaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12213066 tattattttggtcgatgtacaatgaagtaagaaataattacgaaaactagttatacgaagacctacatagacgctttactggtctgtcaaaggatagcaa 12212967  T
Q  101 aagtctagcaacagatacagtgataacaactttattgttctttttgaattcacaattatgattgtatacgctgctgggtattccatttggtttgcgtgac 200  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  12212966 aagtctagcaacagatatagtgataataactttattgttctttttgaattcacaattatgattgtaaacgctgctgggtattccattttgtttgcgtgac 12212867  T
Q  201 tgattttctgttcattcaaagtttgttgtgatgaaagcttatgcttgttatttctgttattattatgctacgctgctgaaatgtgaaacaatgttacact 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||| |||||||| ||||| | |||||||||    
T  12212866 tgattttctgttaattcaaagtttgttgtgatgaaagcttatgcttgttaattctgttattatt---ctacgcagctgaaatatgaaa-agtgttacact 12212771  T
Q  301 gttatgaatcatgatggga 319  Q
    |||||||||||||||||||    
T  12212770 gttatgaatcatgatggga 12212752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 328 - 489
Target Start/End: Original strand, 42254956 - 42255120
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaa--attttgt 424  Q
    |||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||| ||          |||||||||| |||||||   ||||||    
T  42254956 aaggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtccctggtaaattttttttttgaaattcatctctgcaaatttttttgt 42255055  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    |||||||||||||| ||||   |||||||||||||||||||||| ||| ||  ||||||||||||    
T  42255056 tttttaaaatagtcattggatccactttcttgctgatttgtcccatttctgcatatgtggcagat 42255120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 35212066 - 35212127
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  35212066 aaggctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaa 35212127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 329 - 439
Target Start/End: Original strand, 17066424 - 17066534
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaattttgttttt 428  Q
    ||||||||||||||||||  | |||||||||||  ||||||||||||||||||| ||||||          |||||||||||||||||||||||||||||    
T  17066424 aggctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaattgaaattcatccctgcaaaattttgttttt 17066523  T
Q  429 taaaatagtcc 439  Q
     ||||| ||||    
T  17066524 caaaatggtcc 17066534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 452
Target Start/End: Complemental strand, 12385768 - 12385642
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    |||| ||||||||| ||||||| |||||||||||  ||||||||| ||||||||| ||||||          |||||||||||||||||||  |||||||    
T  12385768 aaggataaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctggtaaaaaaaaatttgaaattcatccctgcaaaattttttgtt 12385669  T
Q  426 ttttaaaatagtccttgggctcacttt 452  Q
    ||||||||| |||||||| | ||||||    
T  12385668 ttttaaaattgtccttggccccacttt 12385642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 32197969 - 32197909
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| |||||||||||  ||| ||||||||||||||||||||||    
T  32197969 aggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtccttggtaa 32197909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 466
Target Start/End: Complemental strand, 36749308 - 36749167
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaa--ttttgt 424  Q
    |||||||||||||| |||||||   ||||||||||||||||||| |||||||||| | ||||           |||||||||||||||||||  ||||||    
T  36749308 aaggctaaaatatgtttttggtcattgcaaatatgacgagtttgagttttggtccctagtaaatttttgttttgaaattcatccctgcaaaaaattttgt 36749209  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    |||||||||||||| ||||   |||||||| |||||||||||    
T  36749208 tttttaaaatagtctttggatccactttctcgctgatttgtc 36749167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 31489993 - 31489935
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  31489993 gctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtccttagtaa 31489935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 39619851 - 39619713
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaa--aattttgttt 426  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||||| | ||||||           || || ||||||||||    ||||||||    
T  39619851 aggctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggttc-tggtaaaaattttttgtaattttatccctgcaattttttttgttt 39619753  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    ||||||||||||||||| |||||||||||  |||||||||    
T  39619752 tttaaaatagtccttggactcactttcttaatgatttgtc 39619713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 464
Target Start/End: Original strand, 12933418 - 12933558
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn---gaaattcatccctgcaaaa--ttttg 423  Q
    ||||||||||||||||||||| |||||||||||   |||||||  ||||||||| ||||||             ||||| |||||||||||||  |||||    
T  12933418 aggctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggtaaaaaaaaaaaaattgaaatccatccctgcaaaaatttttg 12933517  T
Q  424 ttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||| ||||||||| |||||||||||||| |||||    
T  12933518 ttttttaaaaaagtccttggcctcactttcttgcttatttg 12933558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 503
Target Start/End: Complemental strand, 42255947 - 42255785
Alignment:
Q  344 tttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaat--tttgttttttaaaatagtcct 440  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||           ||||||||||| ||||||||  |||||||||||||||||||      
T  42255947 tttggtccctgcaaatatgacgagtttgagttttggtccctggtaaaataaaattttgaaattcatccttgcaaaatattttgttttttaaaatagtctc 42255848  T
Q  441 tgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgtaccaa 503  Q
    | | | |||||||||||||||||||| | |||  |  |||||||||||| || | ||||||||    
T  42255847 tagacacactttcttgctgatttgtctcatttcagcctatgtggcagatgctgattgtaccaa 42255785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 40576765 - 40576817
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  40576765 aggctaaaatatgcttttggtccctgcaaatatgacgaatttggattttggtc 40576817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 498
Target Start/End: Original strand, 5610154 - 5610328
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn--gaaattcatccctgcaaaatt--ttg 423  Q
    |||| ||||||||||||||| | ||||||||||| |||| |||||||||| |||  ||||||            ||||| |||||||||||||||  ||     
T  5610154 aaggttaaaatatgcttttgatccctgcaaatataacgaatttgggttttagtctctggtaaaaaaaaaaatttgaaatccatccctgcaaaattattta 5610253  T
Q  424 ttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgt 498  Q
    |||||||||||||| ||||||  |||||| ||||||||||||| | ||| || |||||||||  ||||| |||||    
T  5610254 ttttttaaaatagttcttgggtccacttttttgctgatttgtcacatttttgcttatgtggcccatactgactgt 5610328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 24195605 - 24195746
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt---aannnnnnnnnngaaattcatccctgcaaaa--tttt 422  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||||||||| ||| ||||   ||          ||||| ||||| |||||||  ||||    
T  24195605 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggtaaaaaaaaaaaaattgaaatccatccttgcaaaatttttt 24195704  T
Q  423 gttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||| ||||||||| | |||||||||| |||||||    
T  24195705 gttttttaaaaaagtccttggccccactttcttgttgatttg 24195746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 28462685 - 28462628
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||| ||| ||||||    
T  28462685 ctaaaatatgcttttggtctctgcaaatatgacgaatttgggttttgatccctggtaa 28462628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 41693643 - 41693704
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||| | |||||||||||| ||| ||||||||||||||| ||||||    
T  41693643 aaggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggtaa 41693704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 32544830 - 32544774
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||| ||||||| |||||||||||  ||| ||||||||||||||||||||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggtccttggtaa 32544774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 36748198 - 36748249
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  36748198 ggctaaaatatgtttttggtccctgcaaatatga-gagtttgggttttggtcc 36748249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 30513340 - 30513286
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcct 383  Q
    ||||||||||||| ||||||| | ||||||||||| |||||||| ||||||||||    
T  30513340 aggctaaaatatgattttggtccttgcaaatatgatgagtttggattttggtcct 30513286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 39618730 - 39618815
Alignment:
Q  404 ttcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcag 487  Q
    |||||||||||||| ||||  || |||||||||||||||||| | |||||||||| |||||||||   ||| ||| ||||||||||    
T  39618730 ttcatccctgcaaatttttttgtattttaaaatagtccttggacccactttcttgatgatttgtcttatttttgtctatgtggcag 39618815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 5611567 - 5611514
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||||| |||||||||||  |||||||||||||| ||||    
T  5611567 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtcc 5611514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 11217132 - 11217071
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||| ||||||||||||||||| |||||||||||  ||||||||  ||||||||| ||||||    
T  11217132 aaggttaaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggtaa 11217071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 13418948 - 13419009
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  ||| ||||||| ||||||| ||||||    
T  13418948 aaggctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctggtaa 13419009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 6589021 - 6589077
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttgg 386  Q
    |||||||||||| ||||||| |||||||||||| |  |||| |||||||||||||||    
T  6589021 ggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtccttgg 6589077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 24197163 - 24197103
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| |||||||||||  ||| |||| |||||||| | ||||||    
T  24197163 aggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggtaa 24197103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 25046300 - 25046240
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| | |||||||||| ||||||| | ||||||||| ||||||    
T  25046300 aggctaaaatatgattttggtccttgcaaatatggcgagtttagattttggtccatggtaa 25046240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 31848204 - 31848144
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || |||||||||||  ||| ||||||||||||||| ||||||    
T  31848204 aggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaa 31848144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 32543483 - 32543539
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||| ||| |||||||  | ||||||||||||| ||||||||||    
T  32543483 taaaatatgcttttggtccctacaaatatagcaagtttgggttttgatccttggtaa 32543539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 36748268 - 36748359
Alignment:
Q  400 gaaattcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    |||||||||| ||||||||||||  ||||| ||||||||||  ||| | |||||| ||||||||||||| | ||| ||  ||||||||||||    
T  36748268 gaaattcatctctgcaaaattttttgttttctaaaatagtctctggacccacttttttgctgatttgtctcatttttgcctatgtggcagat 36748359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 37784072 - 37784119
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    |||| |||||||||||||||||||| |  |||||||||||||||||||    
T  37784072 ttttattttttaaaatagtccttggaccaactttcttgctgatttgtc 37784119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 554243 - 554297
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||||  | ||||| |||||||||||  |||||||||||||||||||    
T  554243 aaggctaaaatataatattggtccctgcaaatatagcgagtttgggttttggtcc 554297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 25037755 - 25037809
Alignment:
Q  335 aaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||| |||| || |||||||||||||||||||||  ||||||||| ||||||    
T  25037755 aaatatgattttagtccctgcaaatatgacgagtttgaattttggtccctggtaa 25037809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 32543570 - 32543640
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    ||||||||||||||||||||| || |  ||||||||||||||||||   | ||| || |||||||||||||    
T  32543570 ttttgttttttaaaatagtccctgagtacactttcttgctgatttgaatcatttttgcttatgtggcagat 32543640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 32544741 - 32544695
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttgt 465  Q
    |||||||||||||||||||| |||||   ||||||||||||||||||    
T  32544741 ttttgttttttaaaatagtcattgggtctactttcttgctgatttgt 32544695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 38742179 - 38742233
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||| ||||||||| |||| || |||||||||||  |||||||||||||||||||    
T  38742179 aaggttaaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtcc 38742233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 25037840 - 25037885
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||| |||| ||| || ||||||||||||||||||    
T  25037840 ttttgttttttaaaaaagtctttgagcccactttcttgctgatttg 25037885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 35837922 - 35837979
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    |||||||||||||| ||||||| |||||||||||| |  |||| |||||| |||||||    
T  35837922 aaggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccttg 35837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 464
Target Start/End: Complemental strand, 41695015 - 41694877
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    ||||||||||||| ||||  | |||||||||||  |||||||| |||||||||| |||| ||          ||||| |||||||||||||  |||||||    
T  41695015 aggctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggtaaaaaatatttttgaaatccatccctgcaaaattttttgtt 41694916  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||| |||| |||  | |||||||||| |||||||    
T  41694915 ttttaaaaaagtctttgaccccactttcttgttgatttg 41694877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 28528905 - 28528957
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||| |||||||||||| ||||||| |  ||||||||||| ||||    
T  28528905 ggctaaaatatggttttggttcctgtaaatatgtctcgtttgggttttagtcc 28528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 46304084 - 46304140
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcctt 384  Q
    |||||||||||||| |||| ||||||||||||||| |  |||| |||||| ||||||    
T  46304084 aaggctaaaatatgattttagttcctgcaaatatgcctcgttttggttttagtcctt 46304140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 46759657 - 46759713
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    ||||||||||||| ||||||| |||||||||||| |  |||| |||||| |||||||    
T  46759657 aggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccttg 46759713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 498
Target Start/End: Complemental strand, 42447848 - 42447675
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaatttt--gt 424  Q
    |||||||||||||||||||| |||||||||||| |   ||||||||||||||||| ||||||           |||||||||||||||||||||||  ||    
T  42447848 aaggctaaaatatgcttttgattcctgcaaatacggttagtttgggttttggtccctggtaaaataaaattttgaaattcatccctgcaaaattttttgt 42447749  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgt 498  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||| ||  |||||| ||||| || |||||    
T  42447748 tttttaaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtgacagatgctgactgt 42447675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 52403184 - 52403043
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-nnnnnnnnnngaaattcatccctgcaa---aattttgt 424  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||           ||| |||||||||||||     ||||||    
T  52403184 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctggtaatttttttttttgaatttcatccctgcaatttttttttgt 52403085  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    ||||||||||||||||||| | |||||||||| |||||||||    
T  52403084 tttttaaaatagtccttggacccactttcttgatgatttgtc 52403043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 977905 - 977846
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  977905 ggctgaaatatgcttttggtccctgcaaatatgacgagtttgggttttggtccttggtaa 977846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 466
Target Start/End: Original strand, 42446525 - 42446665
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgc--aaaattttgtt 425  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||  | || ||          |||||||||||||||  |||||||||||    
T  42446525 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtcgatagtaaaagaaatttttgaaattcatccctgcaaaaaattttgtt 42446624  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    |||||||||||||||| | | || ||||||| |||||||||    
T  42446625 ttttaaaatagtcctttgacccaatttcttgttgatttgtc 42446665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 463
Target Start/End: Original strand, 52401015 - 52401153
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaa--attttgt 424  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||| ||          ||| ||||||||||||||   ||||||    
T  52401015 aaggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggtaaattttttttttgaatttcatccctgcaaatttttttgt 52401114  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgattt 463  Q
    ||||||||||||||| ||| | |||||||||| ||||||    
T  52401115 tttttaaaatagtccatggacccactttcttgatgattt 52401153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 20489416 - 20489358
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaa 20489358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 40477435 - 40477322
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-nnnnnnnnnngaaattcatccctgcaaaa--ttttgt 424  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| | ||||           |||||||||||||||||||  ||||||    
T  40477435 aaggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtccctagtaatttttttttttgaaattcatccctgcaaaattttttgt 40477336  T
Q  425 tttttaaaatagtc 438  Q
    ||||||||||||||    
T  40477335 tttttaaaatagtc 40477322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 442
Target Start/End: Complemental strand, 48035790 - 48035676
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgtttt 427  Q
    ||||||||||| ||||| | |||||||||||||||||||||| ||||||||| |||| ||          |||||||||||||||||||  |||||| ||    
T  48035790 gctaaaatatgtttttgatccctgcaaatatgacgagtttggattttggtccctggtaaatttcttttttgaaattcatccctgcaaaattttttgtatt 48035691  T
Q  428 ttaaaatagtccttg 442  Q
    |||||||||||||||    
T  48035690 ttaaaatagtccttg 48035676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 39820664 - 39820604
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  39820664 aggctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 39820604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 443
Target Start/End: Original strand, 4705681 - 4705799
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn---gaaattcatccctgcaaaatttt--gt 424  Q
    |||||||||||||||||| | |||||||||||| ||||||| ||||||||||| ||||||             ||||| |||||||||||||||||  ||    
T  4705681 ggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtccctggtaatttttttctttttgaaatccatccctgcaaaattttttgt 4705780  T
Q  425 tttttaaaatagtccttgg 443  Q
    |||||||||||||||||||    
T  4705781 tttttaaaatagtccttgg 4705799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 52708676 - 52708625
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  52708676 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtc 52708625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 38505639 - 38505586
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||||||||| | |||||||||||| |||||||| ||||||||||    
T  38505639 aggctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggtcc 38505586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 53121300 - 53121361
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||| |||| ||||||    
T  53121300 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaa 53121361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 22508738 - 22508794
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||| ||||||| |||||||||||  |||||||| |||||||||||||||||    
T  22508738 taaaatatgattttggtccctgcaaatatagcgagtttgagttttggtccttggtaa 22508794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 39819383 - 39819449
Alignment:
Q  400 gaaattcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||| |||||||||||||||||  |||||| |||| ||||||||| | ||||||||||||||||||    
T  39819383 gaaatccatccctgcaaaattttttgtttttcaaaaaagtccttggccccactttcttgctgatttg 39819449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 20488368 - 20488425
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||| ||||||| ||||||||||||  || ||||||||||||||| ||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggtaa 20488425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 43734102 - 43734049
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    ||||||||||||||| |||||||| |||||||||  | ||||||||||||||||    
T  43734102 aaggctaaaatatgcgtttggttcttgcaaatatagcaagtttgggttttggtc 43734049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 464
Target Start/End: Complemental strand, 45268630 - 45268492
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaatttt--gtt 425  Q
    ||||||||||||| ||||  | |||||||||||  | ||||||||||||||||| ||||||           ||||| |||||||||||||||||  |||    
T  45268630 aggctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggtaaaaaaaaattttgaaatccatccctgcaaaattttttgtt 45268531  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||| |||  | |||||||||||| |||||    
T  45268530 ttttaaaatagtcattgaccccactttcttgcttatttg 45268492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 46026075 - 46026128
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||| |||||||||    
T  46026075 aggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtcc 46026128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 46027478 - 46027417
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||||||| |||||||||||  ||||||||  ||||||||| ||||||    
T  46027478 aaggctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggtaa 46027417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 47433869 - 47433809
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| |||||||||||  ||| |||| |||||||||| ||||||    
T  47433869 aggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 47433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 442
Target Start/End: Original strand, 48033133 - 48033176
Alignment:
Q  401 aaattcatccctgcaaaa--ttttgttttttaaaatagtccttg 442  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  48033133 aaattcatccctgcaaaaatttttgttttttaaaatagtccttg 48033176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 51004213 - 51004256
Alignment:
Q  400 gaaattcatccctgcaaaa--ttttgttttttaaaatagtcctt 441  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  51004213 gaaattcatccctgcaaaattttttgttttttaaaatagtcctt 51004256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 43641143 - 43641202
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||| || |||||||||||  ||||||||| || |||||| ||||||    
T  43641143 ggctaaaatatgcttttagtccctgcaaatatagcgagtttggattatggtccctggtaa 43641202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 46104343 - 46104402
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| |||||||||||  |||||||| ||||| |||| ||||||    
T  46104343 ggctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtccctggtaa 46104402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 48033058 - 48033117
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| | ||||||||||  |||||||| ||||||||| ||||||    
T  48033058 ggctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtccctggtaa 48033117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 32637246 - 32637188
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||| |||| |||| |  ||||||||||||||||| | ||||||    
T  32637246 gctaaaatatgcttttggtccctgtaaatgtagcgagtttgggttttggttcctggtaa 32637188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 40476222 - 40476272
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    ||||||||||| ||||||| |||||||||||  ||||||||| ||||||||    
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtc 40476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 45267306 - 45267364
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||| ||||| | |||||||||||  |||||||| |||||||||| ||||||    
T  45267306 gctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctggtaa 45267364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 977827 - 977767
Alignment:
Q  406 catccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||||  |||||||||||||||| |||| | |||||| ||| |||||||    
T  977827 catccctgcaaaattttttgttttttaaaatagtcattggccccactttattgatgatttg 977767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 20585704 - 20585651
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||| | |||||||||||  ||||||||| |||||||||    
T  20585704 aggctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtcc 20585651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 28942907 - 28942846
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| |||| ||||||||||||||| |  |||| |||||| |||| ||||||    
T  28942907 aaggctaaaatatggttttagttcctgcaaatatgcctcgttttggttttagtccctggtaa 28942846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 35639505 - 35639562
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    |||||||||||||||||||||| | || ||||||  | |||||| |||||||||||||    
T  35639505 aaggctaaaatatgcttttggtccttgaaaatatagcaagtttgagttttggtccttg 35639562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 41780777 - 41780732
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||||| ||| |  |||||||||||||||||    
T  41780777 ttttgttttttaaaatagtccatggacctactttcttgctgatttg 41780732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 44506580 - 44506629
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggtttt 377  Q
    |||||||||||||| |||| || ||||||||||| |||||||| ||||||    
T  44506580 aaggctaaaatatggttttagtccctgcaaatataacgagttttggtttt 44506629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 46027388 - 46027339
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||| |||||||||||||| ||||| || || ||||||||||||||||||    
T  46027388 aaaaatttgttttttaaaacagtccctgagcccactttcttgctgatttg 46027339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 468
Target Start/End: Complemental strand, 53632775 - 53632726
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttgtccc 468  Q
    |||| |||||||||||||||| | | | ||||||||||||||||||||||    
T  53632775 ttttattttttaaaatagtccctagacccactttcttgctgatttgtccc 53632726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 54437527 - 54437474
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||||| |||||||||||  ||| |||| ||||||||||    
T  54437527 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtcc 54437474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 7208639 - 7208595
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgattt 463  Q
    |||||||||||||||||||| |||| | |||||||||||| ||||    
T  7208639 ttttgttttttaaaatagtcattggacacactttcttgcttattt 7208595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 28427244 - 28427304
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| ||||||||||||||| |  |||| |||||| |||| ||||||    
T  28427244 aggctaaaatatggttttagttcctgcaaatatgtctcgttttggttttagtccctggtaa 28427304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 34238597 - 34238657
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || |||||||||||| |  |||| |||||| |||||||||||    
T  34238597 aggctaaaatatggttttagtccctgcaaatatgtctcgttttggttttagtccttggtaa 34238657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 35639600 - 35639644
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgattt 463  Q
    ||||||||||||||| ||| ||||| | |||||||||||||||||    
T  35639600 ttttgttttttaaaaaagttcttggccccactttcttgctgattt 35639644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 42444035 - 42444083
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttt 376  Q
    |||| ||||||||| ||||||| |||||||||||| | |||||||||||    
T  42444035 aaggttaaaatatgtttttggtccctgcaaatatggcaagtttgggttt 42444083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 44507860 - 44507808
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggt 380  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||  |||||||    
T  44507860 aaggctaaaatatgattttggtccctgcaaatatagcgagtttgaattttggt 44507808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 486
Target Start/End: Original strand, 202578 - 202738
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaa-ttcatccctgcaaaatttt--gtt 425  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||  |||||           ||| |||||||||||||||||||  |||    
T  202578 aggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtcccgggtaaattttttttttaaaattcatccctgcaaaattttttgtt 202677  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggca 486  Q
    |||||||||||||| ||| |||||||||||||||||||| | | ||| || ||||||||||    
T  202678 ttttaaaatagtccctggactcactttcttgctgatttggcacctttttgcttatgtggca 202738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 328 - 487
Target Start/End: Complemental strand, 24611178 - 24611016
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaa--ttttgt 424  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||||||||| ||||||           ||| |||||||||||||||  ||||||    
T  24611178 aaggctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggtaaaataaaattttgaatttcatccctgcaaaaatttttgt 24611079  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcag 487  Q
    |||| |||||||||||||| | |||||||||| ||||||||| | ||| ||| ||||||||||    
T  24611078 ttttcaaaatagtccttggacccactttcttgatgatttgtctcatttttgtctatgtggcag 24611016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 50164401 - 50164461
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggta 388  Q
    |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||    
T  50164401 aaggctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtccttggta 50164461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 26863858 - 26863997
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaa--ttttgt 424  Q
    ||||||||||| || ||||||| |||||||||||  ||| |||| |||||||||| ||||||           |||| ||||||||||||||  ||||||    
T  26863858 aaggctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaattttttttttgaaaatcatccctgcaaaaatttttgt 26863957  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  26863958 tttttaaaatagtccttgggcccactttattgctgatttg 26863997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 9774949 - 9774888
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  9774949 aaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 9774888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 13074635 - 13074574
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  13074635 aaggctaaaatatatttttggttcctgcaaatatgacgagtttgagttttggtccctggtaa 13074574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 39163084 - 39163024
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||    
T  39163084 aggctaaaatatgcttttggtccctgcaaatatggcgaggttgggttttggtccctggtaa 39163024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 466
Target Start/End: Original strand, 24609919 - 24610058
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgttt 426  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||| | || ||          ||| |||||||||||||||  ||||||||    
T  24609919 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctagtaaataaattttttgaatttcatccctgcaaaattttttgttt 24610018  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    ||||||||||||| | | | |||||| ||| |||||||||    
T  24610019 tttaaaatagtccctcgccccacttttttggtgatttgtc 24610058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 35911949 - 35911888
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||||| |||||||||||  ||| ||||| ||||||||||||||||    
T  35911949 aaggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccttggtaa 35911888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 9774040 - 9774149
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-nnnnnnnnnngaaattcatccctgcaaaa--ttttgtttttt 429  Q
    ||||||||| ||||||| ||||||||||| ||||||||| |||||||||| ||||||           |||||||||||||||||||  |||||||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctggtaatttttttttttgaaattcatccctgcaaaattttttgtttttt 9774139  T
Q  430 aaaatagtcc 439  Q
    ||||||||||    
T  9774140 aaaatagtcc 9774149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 27264276 - 27264216
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  27264276 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 27264216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 34934807 - 34934747
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||| || |||||||||||  ||| ||||||||||||||||||||||    
T  34934807 aggctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggtaa 34934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 35721100 - 35721160
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| ||||||    
T  35721100 aggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggtaa 35721160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 464
Target Start/End: Original strand, 20722472 - 20722607
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtttt 427  Q
    ||||||||| |||||||||| |||||||||||  ||| ||||||||||||||| ||||||          ||||  |||||||||||||  |||||| ||    
T  20722472 ggctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaaaaattgaaa-acatccctgcaaaattttttgtctt 20722570  T
Q  428 ttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||   |||||| |||||||||||    
T  20722571 ttaaaatagtccttggatccactttattgctgatttg 20722607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 30722193 - 30722255
Alignment:
Q  406 catccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    |||||||||||||||||  ||||||||||||||||| ||| | ||||||||||||||||||||    
T  30722193 catccctgcaaaattttttgttttttaaaatagtccctggacccactttcttgctgatttgtc 30722255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 37396899 - 37396840
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||| |||||||||||  ||| |||| |||||||||||||||||    
T  37396899 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaa 37396840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 47038864 - 47039003
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgt 424  Q
    |||||||||||||| |||| || |||||||||||  | ||||||||||||||||| |||| ||          ||| | |||||||||||||  ||||||    
T  47038864 aaggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggtaaaaaaaaattttgaattccatccctgcaaaaatttttgt 47038963  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||| | |||||||| | |||||||    
T  47038964 tttttaaaatagtccttggacccactttctagttgatttg 47039003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 17977620 - 17977559
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||| ||||||| ||||||| |||||||||||  ||| ||||||||||||||||||||||    
T  17977620 aaggcttaaatatggttttggtccctgcaaatatagcgaatttgggttttggtccttggtaa 17977559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 27262906 - 27262967
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  |||||||| |||||||||| ||||||    
T  27262906 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaa 27262967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 464
Target Start/End: Complemental strand, 46075109 - 46074975
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaattttgttttt 428  Q
    |||||||||||| ||||| | |||||||||||  ||||||||||||||||||| |||| ||          |||||| |||||||| ||||||| || ||    
T  46075109 ggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaaattgaaattaatccctgc-aaatttttttgtt 46075011  T
Q  429 taaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||| ||| | |||||||||||| |||||    
T  46075010 taaaatagtccctggacccactttcttgcttatttg 46074975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 39162823 - 39162883
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaat-atgacgagtttgggttttggtccttggtaa 389  Q
    ||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  39162823 ggctaaattatgcttttggtccctgcaaataatggcgagtttggattttggtccttggtaa 39162883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 17976761 - 17976820
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||| ||||||| |||||||||||||||||||  ||| ||||||||||||||| ||||||    
T  17976761 ggcttaaatatggttttggttcctgcaaatatagcgaatttgggttttggtccctggtaa 17976820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 458
Target Start/End: Original strand, 46073884 - 46074015
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaa--attttgttt 426  Q
    ||||||||||||||||||| | |||||||||||  | | |||||||||| |||| ||||||          ||||||||||||||||||   ||||||||    
T  46073884 aggctaaaatatgcttttgatccctgcaaatatagcaaatttgggttttagtccctggtaaatttttttttgaaattcatccctgcaaatttttttgttt 46073983  T
Q  427 tttaaaatagtccttgggctcactttcttgct 458  Q
    | |||| ||||||||| ||||| |||| ||||    
T  46073984 tctaaattagtccttgagctcattttcctgct 46074015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 48589022 - 48588968
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||||| ||||||| |||| |||||||  ||||||||||||||||||    
T  48589022 aaggctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtcc 48588968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 48594109 - 48594059
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttg 378  Q
    |||||||||||||| ||||||| |||| ||||||| |||||||||||||||    
T  48594109 aaggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttg 48594059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 48598720 - 48598670
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttg 378  Q
    |||||||||||||| ||||||| |||| ||||||| |||||||||||||||    
T  48598720 aaggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttg 48598670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 11710551 - 11710612
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||| | |||| |||||| ||||| |||||||||||||| ||||||    
T  11710551 aaggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaa 11710612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 487
Target Start/End: Complemental strand, 20723749 - 20723587
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaatttt--gt 424  Q
    |||||||||||||| ||||||| |||||||||||  ||| |||| ||||| |||| ||||||           ||||| |||||||||||||||||  ||    
T  20723749 aaggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggtaaaaataaattttgaaatccatccctgcaaaattttttgt 20723650  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcag 487  Q
    ||||||||||||||||||  | ||||||  || ||||||| ||| ||| ||  ||||||||||    
T  20723649 tttttaaaatagtccttgaccccactttactgatgatttggcccatttttgcatatgtggcag 20723587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 37395631 - 37395692
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  ||  ||||||||||||||| ||||||    
T  37395631 aaggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaa 37395692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 30724075 - 30724015
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||| || ||||||||||| || | |||| |||||||||| ||||||    
T  30724075 aggctaaaatatgcttttcgtccctgcaaatataacaaatttgagttttggtccctggtaa 30724015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 51240195 - 51240238
Alignment:
Q  400 gaaattcatccctgcaaaa--ttttgttttttaaaatagtcctt 441  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  51240195 gaaattcatccctgcaaaattttttgttttttaaaatagtcctt 51240238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 23470028 - 23469969
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| |||||||||||  ||||||| ||||||| ||| ||||||    
T  23470028 ggctaaaatatgtttttggtccctgcaaatatagcgagtttcggttttgatccctggtaa 23469969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 439
Target Start/End: Complemental strand, 37545872 - 37545841
Alignment:
Q  408 tccctgcaaaattttgttttttaaaatagtcc 439  Q
    ||||||||||||||||||||||||||||||||    
T  37545872 tccctgcaaaattttgttttttaaaatagtcc 37545841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 15058419 - 15058473
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    ||||||||||| ||||||| ||||||||||||||  |||| |||||| |||||||    
T  15058419 gctaaaatatggttttggtccctgcaaatatgactcgttttggttttagtccttg 15058473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 464
Target Start/End: Original strand, 48856282 - 48856347
Alignment:
Q  401 aaattcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||| |||||| ||||  ||||||||||||||||||||| | |||||| ||| |||||||    
T  48856282 aaattcatccatgcaaatttttttgttttttaaaatagtccttggccccactttattgatgatttg 48856347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 2604187 - 2604138
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttg 378  Q
    ||||||||||||| |||| || ||||||||||||  ||||||||||||||    
T  2604187 aggctaaaatatgtttttagtccctgcaaatatggggagtttgggttttg 2604138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 48153044 - 48153007
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacg 365  Q
    |||||||||||||||||||| | |||||||||||||||    
T  48153044 aaggctaaaatatgcttttgctccctgcaaatatgacg 48153007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 328 - 486
Target Start/End: Complemental strand, 22534783 - 22534622
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgt 424  Q
    |||||||||||||||||||| | |||||||||||  ||||||||||||||||||| |||| ||          ||| |||| ||||||||||  ||||||    
T  22534783 aaggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaatttttttttgaatttcaaccctgcaaaattttttgt 22534684  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggca 486  Q
    ||||||||| ||||||||| | |||||||||||||||||| | | ||| || ||||||||||    
T  22534683 tttttaaaaaagtccttggacccactttcttgctgatttggctcatttttgcttatgtggca 22534622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 466
Target Start/End: Original strand, 10292814 - 10292954
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    |||||||||||||| ||||||| ||| |||||||  ||| |||| |||||| |||||| |||          |||||||||||||||||||  |||||||    
T  10292814 aaggctaaaatatgattttggtcccttcaaatatagcgaatttgcgttttgatccttgataaaaaaatttttgaaattcatccctgcaaaaaattttgtt 10292913  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    |||||||||| |||||||   ||||||||||||||||||||    
T  10292914 ttttaaaataatccttggatccactttcttgctgatttgtc 10292954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 10717120 - 10717180
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  10717120 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 10717180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 10718508 - 10718448
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  10718508 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 10718448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 22533315 - 22533453
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa-ttttgtt 425  Q
    |||||||||||||||||||||| |||| | ||||  ||||||||||||||||||| |||| ||          ||| ||||||||||||||| |||||||    
T  22533315 aaggctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctggtaaaaaaaatttttgaatttcatccctgcaaaatttttgtt 22533414  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||| ||||| |||   ||||||||||||||||||    
T  22533415 ttttaaaaaagtccctggatccactttcttgctgatttg 22533453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 28996835 - 28996971
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaattttgt--ttt 427  Q
    ||||||||||| ||||||| |||||||||||   |||||||||||||||||| ||||||           ||||||||||||||||||||||| |  |||    
T  28996835 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaaaaaagttttgaaattcatccctgcaaaattttttatttt 28996934  T
Q  428 ttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||| | |||||| ||| |||||||    
T  28996935 ttaaaatagtccttggacccactttattgatgatttg 28996971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 486
Target Start/End: Original strand, 38658480 - 38658639
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaa--attttgttt 426  Q
    |||||||||||||||| |||| | |||||||||  ||| ||||||||||||||| ||||||          ||||| ||||||||||||   ||||||||    
T  38658480 aggctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggtaaaaaaaaaattgaaatccatccctgcaaatttttttgttt 38658579  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggca 486  Q
    |||||||||||| |||| | |||||| ||| ||||||| | | ||||||  |||||||||    
T  38658580 tttaaaatagtctttggccccactttattgatgatttggcacatttatgcctatgtggca 38658639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 466
Target Start/End: Original strand, 14197823 - 14197962
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaattttgt-tt 426  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| | ||||          ||| |||||||||||||| |||| | ||    
T  14197823 aaggctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtccctagtaaaaaaaaaattgaatttcatccctgcaaatttttttatt 14197922  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    ||| ||||||||| |||   |||||||||| |||||||||    
T  14197923 ttttaaatagtccatggatccactttcttgatgatttgtc 14197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 463
Target Start/End: Original strand, 36588220 - 36588358
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaatt-catccctgcaaaatttt--gt 424  Q
    |||||||||||||||||||||| |||||||||||  |||||||| |||||||||| ||||||            |||| |||||||||||||||||  ||    
T  36588220 aaggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggtaaaaaaaaaatttgaattacatccctgcaaaattttttgt 36588319  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgattt 463  Q
    |||||||||| |||| ||| | |||||| ||||||||||    
T  36588320 tttttaaaatggtccctggacccacttttttgctgattt 36588358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 36589448 - 36589387
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| |||| ||||||||||||||  ||||||| ||||||||||||||||||    
T  36589448 aaggctaaaatatgattttagttcctgcaaatatagcgagtttaggttttggtccttggtaa 36589387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 464
Target Start/End: Complemental strand, 38456790 - 38456652
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaa--ttttgtt 425  Q
    ||||||||||||||||||||| |||||||||||  | | ||| ||||||||||| ||||||           |||||||||||||||||||  |||||||    
T  38456790 aggctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctggtaaaaaaaaaatttgaaattcatccctgcaaaattttttgtt 38456691  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||| | |   ||||||||||||||||||    
T  38456690 ttttaaaatagtccctagatccactttcttgctgatttg 38456652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 6783576 - 6783692
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaatttt--gtt 425  Q
    |||||||||||||| |||||||  |||||||||||  || ||||  ||||||||||| ||||          |||||||||||||||||||||||  |||    
T  6783576 aaggctaaaatatgtttttggtcactgcaaatatggtgaatttgaattttggtccttcgtaattttttttttgaaattcatccctgcaaaattttttgtt 6783675  T
Q  426 ttttaaaatagtccttg 442  Q
    |||||||||||||||||    
T  6783676 ttttaaaatagtccttg 6783692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 522
Target Start/End: Complemental strand, 4184038 - 4183843
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaa--ttttgttt 426  Q
    ||||||||||||||||| || |||||||||||   | |||||||||||||||| ||||||           |||||  ||||||||||||  ||||||||    
T  4184038 ggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtccctggtaatatttttttttgaaatcgatccctgcaaaaaattttgttt 4183939  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgtaccaatttgaacacgtggcgcaca 522  Q
    ||||||| ||||| ||| | |||||||||||| ||||| | | ||| || ||| |||| || |  | |||||||||| ||||||| ||||||||||    
T  4183938 tttaaaaaagtccctggacccactttcttgctaatttggcacatttttgcttaggtggtagctgatgactgtaccaacttgaacatgtggcgcaca 4183843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 18326599 - 18326673
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    |||| |||||||||||||||||||| || || |||||||||| ||||||||||| ||| ||  ||||||||||||    
T  18326599 aaaaatttgttttttaaaatagtccctgagcccactttcttgttgatttgtcccatttctgcctatgtggcagat 18326673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 45518020 - 45517962
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt 387  Q
    ||||||||||||||||||||| ||||||| |||  ||||||||||||||||||| ||||    
T  45518020 aggctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtccctggt 45517962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 3484843 - 3484743
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaattttgttttttaaa 432  Q
    |||||||||||||||||||||||||||||  |||||||      |||||| ||||||          ||||||||||||| |||||||||||||||||||    
T  3484843 taaaatatgcttttggttcctgcaaatatagcgagttt------tggtccctggtaaaaaaaaatttgaaattcatccctacaaaattttgttttttaaa 3484750  T
Q  433 atagtcc 439  Q
    |||||||    
T  3484749 atagtcc 3484743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 22272331 - 22272270
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||||| || ||||||||  ||| ||||||||||||||| ||||||    
T  22272331 aaggctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctggtaa 22272270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 28998052 - 28998000
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||| ||||||| |||||||||||  |||||||||||||||||||    
T  28998052 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtcc 28998000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 39440480 - 39440429
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtcc 39440429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 4182623 - 4182681
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||| |||| ||||||  ||| ||||||||||||||| ||||||    
T  4182623 gctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctggtaa 4182681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 489
Target Start/End: Complemental strand, 10293796 - 10293722
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    |||||||||||||||||||||||||||   | || ||||||||||||||||| | ||||||  |||||| |||||    
T  10293796 aaaattttgttttttaaaatagtccttaaacccattttcttgctgatttgtctcatttatgcatatgtgacagat 10293722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 38659934 - 38659885
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggtttt 377  Q
    |||| ||||||||||||||||||| || ||||||||||||||||| ||||    
T  38659934 aaggttaaaatatgcttttggttcgtgtaaatatgacgagtttggatttt 38659885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 39439922 - 39439983
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||| | |||||| ||||||| || ||||||    
T  39439922 aaggctaaaatatgattttggtccctgcaaatatggctagtttgagttttggaccctggtaa 39439983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 30124283 - 30124223
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| ||||||||||   | |||||| |||||||||| ||||||    
T  30124283 aggctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggtaa 30124223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 41846717 - 41846808
Alignment:
Q  400 gaaattcatccctgcaaaa--ttttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    |||||||||||||||||||  |||| |||||||||||||||||| | | ||||||  |||| ||||||||| ||| ||  ||||||| ||||    
T  41846717 gaaattcatccctgcaaaaatttttcttttttaaaatagtccttagacccacttttgtgctaatttgtcccatttttgcctatgtggtagat 41846808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 3483635 - 3483685
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||| ||||||| |||||||||||  |||||||| ||||||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtcc 3483685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 16644046 - 16643985
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| |||| || ||||||||||||||  |||| |||||| |||| ||||||    
T  16644046 aaggctaaaatatggttttagtccctgcaaatatgactcgttttggttttagtccctggtaa 16643985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 22271032 - 22271081
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||||||||| | | | |||||| |||||||||||    
T  22271032 aaaattttgttttttaaaatagtccctagacccactttgttgctgatttg 22271081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 1420501 - 1420449
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||| ||||||| |||||||||||  ||||||||| | |||||||    
T  1420501 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggatattggtcc 1420449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 14711603 - 14711646
Alignment:
Q  400 gaaattcatccctgcaaaa--ttttgttttttaaaatagtcctt 441  Q
    |||||||||||||||||||  ||||||||||||||||| |||||    
T  14711603 gaaattcatccctgcaaaattttttgttttttaaaataatcctt 14711646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 22270942 - 22271002
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||| | |||||||||||  ||| ||||| |||| |||| ||||||    
T  22270942 aggctaaaatatgcttttgatccctgcaaatatagcgaatttggattttagtccctggtaa 22271002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 41357354 - 41357287
Alignment:
Q  400 gaaattcatccctgcaaaa--ttttgttttttaaaatagtccttgggctcactttcttgctgatttgt 465  Q
    ||||| |||||||||||||  ||||||||||| |||||||  ||||||  ||||||||| ||||||||    
T  41357354 gaaatgcatccctgcaaaaaattttgttttttgaaatagttattgggcctactttcttgatgatttgt 41357287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 329 - 443
Target Start/End: Original strand, 29728 - 29845
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||| |||| ||          |||||||||||||||||||  |||||||    
T  29728 aggctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctggtaaaaaaaaaatttgaaattcatccctgcaaaaatttttgtt 29827  T
Q  426 ttttaaaatagtccttgg 443  Q
    ||||||||||||||||||    
T  29828 ttttaaaatagtccttgg 29845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 30967 - 30907
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| |||||||||||   |||||||||||||||||| ||||||    
T  30967 aggctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 30907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 329 - 452
Target Start/End: Original strand, 19674413 - 19674538
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgttt 426  Q
    ||||||||||||||||||||| | |||||||||  |||||||| |||||||||| ||||||          |||||||||||||||||||  ||||||||    
T  19674413 aggctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtccctggtaattttttttttgaaattcatccctgcaaaattttttgttt 19674512  T
Q  427 tttaaaatagtccttgggctcacttt 452  Q
    ||||||| ||||||||| | ||||||    
T  19674513 tttaaaaaagtccttggccccacttt 19674538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 463
Target Start/End: Original strand, 45618284 - 45618420
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgc--aaaattttgttt 426  Q
    ||||||| ||||||||||||| |||||||||||  ||||||||||||||||||| ||||||          ||| | |||||||||  ||||||||||||    
T  45618284 aggctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaattgaattacatccctgcaaaaaattttgttt 45618383  T
Q  427 tttaaaatagtccttgggctcactttcttgctgattt 463  Q
    |||||||  |||||||| | |||||| ||||||||||    
T  45618384 tttaaaacggtccttggacccacttttttgctgattt 45618420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 3880557 - 3880419
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgc--aaaattttgtt 425  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||| | ||||          ||| || ||||||||  |||||||||||    
T  3880557 aaggctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtccctagtaaaaaaaaaattgaattttatccctgcaaaaaattttgtt 3880458  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||| ||||| ||| | || |||||| ||||||||    
T  3880457 ttttaaaaaagtccctggacccattttcttactgatttg 3880419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 19675679 - 19675566
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtttt 427  Q
    |||||||||||||||||||| ||||||||||| |||||||||| ||||||||| || |||          ||||||||||||| |||||  |||||||||    
T  19675679 ggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccctgataa-aaaaaatttgaaattcatccctacaaaattttttgtttt 19675581  T
Q  428 ttaaaatagtccttg 442  Q
    |||||||||||||||    
T  19675580 ttaaaatagtccttg 19675566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 498
Target Start/End: Original strand, 29415623 - 29415722
Alignment:
Q  401 aaattcatccctgcaaaattttgt--tttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgt 498  Q
    ||||||||||||||||| |||| |  ||||||||||||||||||| | ||| |||||||||||||||||  ||| ||| |||||||||||| || |||||    
T  29415623 aaattcatccctgcaaatttttttaatttttaaaatagtccttggacccaccttcttgctgatttgtcctatttctgtctatgtggcagatgctgactgt 29415722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 16573376 - 16573514
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    ||||||||||||||||||||||  || |||||||| ||| ||||||||||||||  |||||           ||||| |||||||||||||  |||||||    
T  16573376 aaggctaaaatatgcttttggtctctacaaatatggcgaatttgggttttggtctctggtatttttttttttgaaatccatccctgcaaaattttttgtt 16573475  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||| |||| | |||||| ||| |||||||    
T  16573476 ttttaaaatagtctttggccccactttattgatgatttg 16573514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 464
Target Start/End: Complemental strand, 54121760 - 54121622
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnnga-aattcatccctgcaaaat--tttgtt 425  Q
    ||||||||||||| ||||| | |||||||||| | ||||||||||||||||||| ||||||             ||||||||| ||||||||  ||||||    
T  54121760 aggctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggtaaaaaaaaaaaatttaattcatccttgcaaaatattttgtt 54121661  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||| ||| ||| ||||||||||||||||||    
T  54121660 ttttaaaatagttcttaggcccactttcttgctgatttg 54121622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 34659704 - 34659758
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||||||||||||| |||||||||||| ||||||  |||||||||||    
T  34659704 aaggctaaaatatgcttttggtccctgcaaatatggcgagttaaggttttggtcc 34659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 464
Target Start/End: Original strand, 3879085 - 3879227
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-----nnnnnnnnnngaaattcatccctgcaaaa--ttt 421  Q
    ||||||||||||||||||| | |||||||||||  ||||||||| ||||||||| ||||||               ||| ||||||||| |||||  |||    
T  3879085 aggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaaattttttttttttttgaatttcatccctacaaaattttt 3879184  T
Q  422 tgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    | |||||||||| ||||||||| ||||||||||||||||||||    
T  3879185 tattttttaaaaaagtccttggactcactttcttgctgatttg 3879227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 17371901 - 17371845
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||| | ||||||||||| |||| ||||||||||||||| ||||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctggtaa 17371845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 41933817 - 41933877
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||||||  ||||||||||  ||||||||||||||||||||| ||||    
T  41933817 aggctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtccttagtaa 41933877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 487
Target Start/End: Original strand, 41933910 - 41933978
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcag 487  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || | | ||| || |||||||||||    
T  41933910 ttttgttttttaaaatagtccttgaactcactttcttgctgatgtggctcatttttgcttatgtggcag 41933978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 41935126 - 41935078
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtc 41935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 22204055 - 22204114
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| |||||||||||  |||||||||||||| |||| ||||||    
T  22204055 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaa 22204114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 42358103 - 42358169
Alignment:
Q  400 gaaattcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||| | ||||||||| || |||||    
T  42358103 gaaatccatccctgcaaaattttttgttttttaaaatagtccttggacccactttcttacttatttg 42358169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 42359405 - 42359346
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| |||||||||||  ||||||||| ||||||||| ||||||    
T  42359405 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaa 42359346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 466
Target Start/End: Complemental strand, 32699373 - 32699234
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaattttgt--tt 426  Q
    |||||||||||| ||||||| |||| ||||||  ||||||||||||||||||| |  |||           ||||||| ||||||||||||||| |  ||    
T  32699373 ggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtccctcataaaaaaaaaatttgaaattcgtccctgcaaaattttttattt 32699274  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    ||||||||||||| | ||| |||||| |||||||||||||    
T  32699273 tttaaaatagtccctaggcccacttttttgctgatttgtc 32699234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 484
Target Start/End: Original strand, 32698081 - 32698150
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtgg 484  Q
    |||||||| ||||||||||||||| |||||  |||||| ||||||||||||| | ||| || ||||||||    
T  32698081 aaaattttattttttaaaatagtcattgggtccacttttttgctgatttgtcacatttttgcttatgtgg 32698150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 33134890 - 33134943
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||| | |||||||||||||||||||||| | |||||||    
T  33134890 aggctaaaatatgtttttgatccctgcaaatatgacgagtttggatattggtcc 33134943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 33137289 - 33137228
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||| | |||||||||||  |||||||||||||| |||| ||||||    
T  33137289 aaggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaa 33137228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 41935036 - 41934991
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||    
T  41935036 ttttgttttttaaaatagtccttggacccactttgttgctgatttg 41934991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 29060863 - 29060804
Alignment:
Q  406 catccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgattt 463  Q
    |||||||||||||||||  ||||||||||||||| | ||| | |||||||||||||||||    
T  29060863 catccctgcaaaattttttgttttttaaaatagttcatggacccactttcttgctgattt 29060804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 30091115 - 30091055
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| | ||||||||||||||||||  |||||| ||| ||||||    
T  30091115 aggctaaaatatggttttggtccatgcaaatatgacgagtttaagttttgatccatggtaa 30091055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 45533364 - 45533455
Alignment:
Q  400 gaaattcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    ||||||||| |||||||||||||  ||||||||||||||||  ||  | |||||||||||| ||| ||| | ||||||  ||||||||||||    
T  45533364 gaaattcattcctgcaaaattttttgttttttaaaatagtctctgaacccactttcttgcttattagtctcgtttatgcctatgtggcagat 45533455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 40198575 - 40198633
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||    |||||||||||  ||||||||||||||||||| ||||||    
T  40198575 aaggctaaaatatgcttttc---cctgcaaatatagcgagtttgggttttggtccctggtaa 40198633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 5827975 - 5827921
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||||| ||||||| ||||||||||||||  |||| |||||| ||||    
T  5827975 aaggctaaaatatggttttggtccctgcaaatatgactcgttttggttttagtcc 5827921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 13631601 - 13631547
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||||| ||||||| ||||||||||||||  |||| |||||| ||||    
T  13631601 aaggctaaaatatggttttggtccctgcaaatatgactcgttttggttttagtcc 13631547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 31812215 - 31812181
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatg 362  Q
    |||||||||||||| ||||||||||||||||||||    
T  31812215 aaggctaaaatatggttttggttcctgcaaatatg 31812181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 42848025 - 42848059
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatg 362  Q
    |||||||||||||| ||||||||||||||||||||    
T  42848025 aaggctaaaatatggttttggttcctgcaaatatg 42848059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 4211560 - 4211613
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||||| |||||||||||| |  |||| |||||||||||    
T  4211560 aggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtcc 4211613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 5259212 - 5259171
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtt 369  Q
    |||||||||||||| ||||||| |||||||||||| ||||||    
T  5259212 aaggctaaaatatgtttttggtccctgcaaatatggcgagtt 5259171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 12152494 - 12152441
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||||| |||||||||||| |  |||| |||||||||||    
T  12152494 aggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttggtcc 12152441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 14487801 - 14487854
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||| ||||||| |||||||||||| |  |||| |||||||||||    
T  14487801 aggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtcc 14487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 16916069 - 16916118
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    ||||||||| |||||||| ||||||||||||  ||||||| |||||||||    
T  16916069 ctaaaatatacttttggtccctgcaaatatggtgagtttgagttttggtc 16916118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 17281569 - 17281630
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||| ||||||| || |||||||||||  ||| ||||| ||||||||| ||||||    
T  17281569 aaggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctggtaa 17281630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 17370071 - 17370132
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||| ||||||| || |||||||||||  ||| ||||| ||||||||| ||||||    
T  17370071 aaggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctggtaa 17370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 29060943 - 29060882
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||  | |||||||||||  ||||||||  ||||||||||||||||    
T  29060943 aaggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggtccttggtaa 29060882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 34659798 - 34659843
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||||||| |||| |||||||| ||| |||||||    
T  34659798 ttttgttttttaaaatagtctttggcctcactttattgatgatttg 34659843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 29597747 - 29597799
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    ||||||||| | ||||| |||||||||||||| | ||||| ||||||||||||    
T  29597747 taaaatatgttattggtccctgcaaatatgaccaatttggattttggtccttg 29597799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 44706412 - 44706364
Alignment:
Q  341 gcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||  ||| ||||||||||||||||||||||| ||| ||||||    
T  44706412 gcttttggtcactgtaaatatgacgagtttgggttttgatccctggtaa 44706364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 45619791 - 45619731
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || |||||||||||  ||||||| ||||||| ||| ||||||    
T  45619791 aggctaaaatatgtttttagtccctgcaaatatagcgagtttaggttttgttccctggtaa 45619731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 46292392 - 46292444
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||| ||||||| |||||||||||| |  |||| |||||||||||    
T  46292392 ggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtcc 46292444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 121044 - 120985
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  121044 ggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggtaa 120985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 119593 - 119652
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||| |||||||||||  ||| |||| |||||||||| ||||||    
T  119593 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 119652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 1778849 - 1778790
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  1778849 ggctaaaatatgcttttggttcctgcaaatatagcgactttgggttttggtccttggtaa 1778790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 522
Target Start/End: Original strand, 25977869 - 25978065
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaa--ttttgtt 425  Q
    ||||||||||||| ||||||| |||||||||||   |||||||||||||||||| ||||||           |||||  ||||||||||||  |||||||    
T  25977869 aggctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctggtaatatttttttttgaaatcgatccctgcaaaaaattttgtt 25977968  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgtaccaatttgaacacgtggcgcaca 522  Q
    |||||||| ||||| ||| | |||||||||||||||||| | | ||| || ||| |||| || |  | |||||||||| ||||||| ||||||||||    
T  25977969 ttttaaaaaagtccctggacccactttcttgctgatttggcacatttttgcttaggtggtagctgatgactgtaccaacttgaacatgtggcgcaca 25978065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 21573938 - 21573995
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||    
T  21573938 ctaaaatatgcttttggtccctgcaaatatgacaagtttgatttttggtccttggtaa 21573995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 25979312 - 25979174
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaa--attttgtt 425  Q
    |||||||||||||| ||||||| |||||||||||  ||| ||||||||||||||| ||||||          |||||  ||||||| |||   |||||||    
T  25979312 aaggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaaaatttgaaatcaatccctgtaaatttttttgtt 25979213  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||| ||||||||| | || |||||||||||||||    
T  25979212 ttttaaaaaagtccttggccccattttcttgctgatttg 25979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 43824241 - 43824298
Alignment:
Q  407 atccctgcaaaattttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||    
T  43824241 atccctgcaaaattttgttttttaaaatagtctttggatccactttcttgctgatttg 43824298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 1777467 - 1777528
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  |||||||| |||||||||| ||||||    
T  1777467 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggtaa 1777528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 489
Target Start/End: Original strand, 23861751 - 23861913
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaa--aattttgttt 426  Q
    ||||||||||||| ||||||| ||||||||||||  |||||||| ||||||||| ||||||          ||||| |||||||||||    ||||||||    
T  23861751 aggctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggtaaaaaaaaatttgaaatccatccctgcaattttttttgttt 23861850  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagat 489  Q
    ||||||||||||| |||   |||||| ||| |||||||  || ||| |  |||||||||||||    
T  23861851 tttaaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggcagat 23861913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 30843642 - 30843703
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||  |  |||||||||| |||||||||||||||||||| ||||||    
T  30843642 aaggctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctggtaa 30843703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 2412488 - 2412428
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| |||||||||||  |||||||||||||| |||| ||||||    
T  2412488 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaa 2412428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 486
Target Start/End: Complemental strand, 23863107 - 23862950
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnn-gaaattcatccctgcaaaatttt--gttttt 428  Q
    |||||||||| |||||||  ||||||||||| ||||||||||||||| ||| | ||||           ||||| ||||| |||||||||||  ||||||    
T  23863107 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttgatccctagtaaaaaaaaaaattgaaatccatccttgcaaaattttttgttttt 23863008  T
Q  429 taaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggca 486  Q
     ||||||||| |||| | |||||| ||||||||||||||  ||||||  |||||||||    
T  23863007 caaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggca 23862950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 36836537 - 36836603
Alignment:
Q  400 gaaattcatccctgcaaaa--ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||  | |||||||||||| |||||    
T  36836537 gaaattcatccctgcaaaaaattttgttttttaaaatagtccctgaacccactttcttgcttatttg 36836603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 8809594 - 8809656
Alignment:
Q  328 aaggctaaaatatgcttttggttcct-gcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| ||| |||||||| |||| ||||||||||||||| ||||||    
T  8809594 aaggctaaaatatgtttttggtcccttgcaaatataacgaatttgggttttggtccctggtaa 8809656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 24749571 - 24749522
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||    
T  24749571 aaaattttgttttttaaaacggtccttggacccactttcttgctgatttg 24749522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 11087049 - 11087108
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||  | |||||||||||  ||||||||| ||||||||||||||||    
T  11087049 ggctaaaatatgattttaatccctgcaaatatagcgagtttggcttttggtccttggtaa 11087108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 11087128 - 11087190
Alignment:
Q  406 catccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    |||||||||||||||||  ||||||||||||||||  | | | ||||||||||||||||||||    
T  11087128 catccctgcaaaattttttgttttttaaaatagtctcttgacccactttcttgctgatttgtc 11087190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 3924927 - 3924877
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttg 378  Q
    |||||||||||||||||||| | | |||||||||| ||||||||| |||||    
T  3924927 aaggctaaaatatgcttttgctccttgcaaatatggcgagtttggattttg 3924877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 17302145 - 17302111
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatg 362  Q
    |||||||||||||| ||||||||||||||||||||    
T  17302145 aaggctaaaatatggttttggttcctgcaaatatg 17302111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 18113087 - 18113141
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||||| ||||||| |||||||||||| | ||||| |||||| ||||    
T  18113087 aaggctaaaatatggttttggtccctgcaaatatgcctagttttggttttagtcc 18113141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 463
Target Start/End: Complemental strand, 36837834 - 36837703
Alignment:
Q  333 taaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtttttta 430  Q
    ||||||||  |||||||  ||||||||||  ||||||||||||||||||| ||||||          ||||| |||||||||||||  ||||||||||||    
T  36837834 taaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggtaa-aaaaaaaatgaaatccatccctgcaaaattttttgtttttta 36837736  T
Q  431 aaatagtccttgggctcactttcttgctgattt 463  Q
    |||||||| |||  | ||||||| |||| ||||    
T  36837735 aaatagtctttgaacccactttcgtgcttattt 36837703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 486
Target Start/End: Complemental strand, 1590883 - 1590799
Alignment:
Q  404 ttcatccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggca 486  Q
    |||||||||||||||||||  ||||||||||| ||||| ||    |||||||||| ||||||| | | ||| |||||||||||||    
T  1590883 ttcatccctgcaaaattttttgttttttaaaaaagtccctgaatccactttcttgttgatttggctcatttttgtttatgtggca 1590799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 3924832 - 3924787
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||||||||| | |||||| ||| |||||||    
T  3924832 ttttgttttttaaaatagtccttggccccactttattgatgatttg 3924787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 25282408 - 25282457
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggt 380  Q
    ||||||||||| ||||||| |||| ||||||| |||||||| ||||||||    
T  25282408 gctaaaatatgtttttggtccctgtaaatatgtcgagtttgagttttggt 25282457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 24754219 - 24754171
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttt 376  Q
    |||| ||||||||| ||||||| |||||||||||| ||| |||||||||    
T  24754219 aaggttaaaatatgtttttggtccctgcaaatatggcgaatttgggttt 24754171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 43788857 - 43788917
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || |||||||||||| |  |||| |||||| |||||||||||    
T  43788857 aggctaaaatatggttttagtccctgcaaatatgcctcgttttggttttagtccttggtaa 43788917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 464
Target Start/End: Complemental strand, 6894069 - 6893932
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaaa--ttttgttt 426  Q
    |||||||||||| ||||||| | |||||||||||||||||| ||||||||||| |||| ||          |||||||||||||||||||  ||||||||    
T  6894069 ggctaaaatatgtttttggtccttgcaaatatgacgagtttaggttttggtccctggtaaaaaaaaaatttgaaattcatccctgcaaaattttttgttt 6893970  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||| |||  | |||||| ||| |||||||    
T  6893969 tttaaaatagtcattgaccccactttattgatgatttg 6893932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 3205159 - 3205102
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||    
T  3205159 ctaaaatatgcttttgatccctgcaaatatgatgagtttgggttttggtccctggtaa 3205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 3936576 - 3936637
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  3936576 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 3936637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 15604114 - 15603993
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtttttt 429  Q
    ||||||| || ||||||| |||||||||||| ||||||||||||||||||| | ||||          |||||||||||||||||||  |||| ||||||    
T  15604114 ctaaaatgtgtttttggt-cctgcaaatatggcgagtttgggttttggtccctagtaaaaaaaaaattgaaattcatccctgcaaaattttttatttttt 15604016  T
Q  430 aaaatagtccttgggctcacttt 452  Q
    |||||||||||||| | ||||||    
T  15604015 aaaatagtccttggacccacttt 15603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 34911889 - 34911779
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaattttgtttt 427  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||| ||||| ||| | ||||          ||||||||||||||||||||||| ||||    
T  34911889 aaggctaaaatatgattttggtccctgcaaatatagcgagtttggattttgatccctagtaaaaaaaaaattgaaattcatccctgcaaaattttatttt 34911790  T
Q  428 ttaaaatagtc 438  Q
    |||||| ||||    
T  34911789 ttaaaaaagtc 34911779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 15599764 - 15599880
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-nnnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    ||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||   ||||           |||||||||||||||||||  |||||||    
T  15599764 aggctaaaatatgcttttggtccctacaaatatggcgaatttgggttttggtccccagtaatttttttttttgaaattcatccctgcaaaattttttgtt 15599863  T
Q  426 ttttaaaatagtccttg 442  Q
    |||||||||||||||||    
T  15599864 ttttaaaatagtccttg 15599880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 14809251 - 14809300
Alignment:
Q  415 aaaattttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  14809251 aaaattttgttttttaaaatagtcattggacccactttcttgctgatttg 14809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 27571190 - 27571129
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||||||||| ||| ||||||    
T  27571190 aaggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggtaa 27571129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 31540495 - 31540555
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| ||||||||||| |||| ||||||||||||| | ||||||    
T  31540495 aggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctggtaa 31540555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 35604417 - 35604472
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcct 383  Q
    |||||||||||||| |||||||| |||||||||| ||||||||| |||||| ||||    
T  35604417 aaggctaaaatatgtttttggtttctgcaaatataacgagtttgagttttgatcct 35604472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 3938120 - 3938060
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||| || |||||||||||  | ||||| ||||||||||| ||||||    
T  3938120 aggctaaaatatgcttttagtccctgcaaatatagcaagtttaggttttggtccctggtaa 3938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 3954051 - 3954111
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| ||||||| | |||||||||  ||| ||||||||||||||| ||||||    
T  3954051 aggctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggtaa 3954111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 4565392 - 4565452
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || ||| |||||||  ||||||||||||||||||| ||||||    
T  4565392 aggctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtccctggtaa 4565452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 383
Target Start/End: Complemental strand, 6044190 - 6044139
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcct 383  Q
    |||||||||| ||||| ||| ||||||||||| ||||||| |||||||||||    
T  6044190 ctaaaatatgattttgattcatgcaaatatgatgagtttgagttttggtcct 6044139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 18258529 - 18258472
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    |||||||||||||| ||||||| |||||||||||| |  |||| |||||| |||||||    
T  18258529 aaggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccttg 18258472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 20416437 - 20416497
Alignment:
Q  407 atccctgcaaaattttgttttttaaaatagtccttgggctcactttcttgctgatttgtccc 468  Q
    |||||||||||| |||||||||||||||| ||| ||  | |||||||| |||||||||||||    
T  20416437 atccctgcaaaaatttgttttttaaaataatcc-tgaacccactttctagctgatttgtccc 20416497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 20660946 - 20661003
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    |||||||||||||| ||||||| |||||||||||| |  |||| |||||| |||||||    
T  20660946 aaggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttagtccttg 20661003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 25254188 - 25254131
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||| |||||||||||   ||||||| |||||| ||| ||||||    
T  25254188 ctaaaatatgcttttggtccctgcaaatatatagagtttgagttttgatccctggtaa 25254131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 25317978 - 25317921
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||| |||||||||||   ||||||| |||||| ||| ||||||    
T  25317978 ctaaaatatgcttttggtccctgcaaatatatagagtttgagttttgatccctggtaa 25317921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 5104001 - 5103969
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatg 362  Q
    |||||||||||| ||||||||||||||||||||    
T  5104001 ggctaaaatatggttttggttcctgcaaatatg 5103969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 40167862 - 40167898
Alignment:
Q  408 tccctgcaaaattttgttttttaaaatagtccttggg 444  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  40167862 tccctgcaaaattttgtttttgaaaatagtccctggg 40167898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 464
Target Start/End: Complemental strand, 34998201 - 34998062
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt--aannnnnnnnnngaaattcatccctgcaaaa--ttttgt 424  Q
    ||||||||||||||||||| | |||||||||||  ||||||||||||||||||| ||||  ||          ||||| ||||| |||||||  ||||||    
T  34998201 aggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaaatttgaaatccatccttgcaaaattttttgt 34998102  T
Q  425 tttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||| |||| ||||||||| | ||||||||||||||||||    
T  34998101 ttttaaaaaaagtccttggccccactttcttgctgatttg 34998062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 465
Target Start/End: Complemental strand, 17517369 - 17517230
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaa--attttgtt 425  Q
    ||||||||||||| ||||||| |||||||||||| |||||||| |||||||||| |||| ||          ||| ||||||||||||||   |||||||    
T  17517369 aggctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggtaaaaaaaaaaattgaatttcatccctgcaaatttttttgtt 17517270  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttgt 465  Q
    |||||||||||| ||||  | |||||||||| ||||||||    
T  17517269 ttttaaaatagtacttgaacccactttcttgatgatttgt 17517230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 29291358 - 29291411
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  29291358 aggctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtcc 29291411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 21165246 - 21165305
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||| |||||||||||  |||||||| |||||||||| ||||||    
T  21165246 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaa 21165305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 16995449 - 16995510
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| ||||||||||| | || ||||||||||||||| ||||||    
T  16995449 aaggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggtaa 16995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 466
Target Start/End: Original strand, 17516164 - 17516301
Alignment:
Q  332 ctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggt-aannnnnnnnnngaaattcatccctgcaaa--attttgttttt 428  Q
    |||||||||| ||||||| ||||||||||||  |||||||||||||||||| || | ||          ||| |||||| |||||||   |||| |||||    
T  17516164 ctaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtccctgataaattttttttttgaatttcatctctgcaaatttttttattttt 17516263  T
Q  429 taaaatagtccttgggctcactttcttgctgatttgtc 466  Q
    ||||||||||||||| | |||||||||| |||||||||    
T  17516264 taaaatagtccttggacccactttcttgatgatttgtc 17516301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 21953205 - 21953265
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||||| |||||||||||  ||| ||||| ||||||||| ||||||    
T  21953205 aggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggtaa 21953265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 17000244 - 17000141
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgtaccaatttgaacacgtggcg 518  Q
    ||||||||||||||| ||||| ||| | |||||||||||||||||| | | ||| || ||| |||| || |  | |||||||||| ||||||| ||||||    
T  17000244 ttttgttttttaaaaaagtccctggacccactttcttgctgatttggcacatttttgcttaggtggtagctgatgactgtaccaacttgaacatgtggcg 17000145  T
Q  519 caca 522  Q
    ||||    
T  17000144 caca 17000141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 18810532 - 18810591
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| |||||||||||   |||||||||||||||||| ||||||    
T  18810532 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 18810591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 1171712 - 1171601
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa-ttttgttt 426  Q
    |||| ||||||||| ||||| | ||||||||||| |||||||||| ||||||||| || |||          ||||| ||||||||||||| ||||||||    
T  1171712 aaggttaaaatatgtttttgatccctgcaaatataacgagtttggtttttggtccctgataaatttttttttgaaatccatccctgcaaaatttttgttt 1171613  T
Q  427 tttaaaatagtc 438  Q
    || |||||||||    
T  1171612 ttaaaaatagtc 1171601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 3279560 - 3279422
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgtt 425  Q
    |||| ||||||||| ||||| | |||||||||||  ||||||||  ||||||| | ||||||          |||||||||||||||||||  |||||||    
T  3279560 aaggttaaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctggtaaaaaaaaaattgaaattcatccctgcaaaattttttgtt 3279461  T
Q  426 ttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||| ||| ||| | ||||||| | ||||||||    
T  3279460 ttttaaaataatccctggacccactttcgtactgatttg 3279422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 20896039 - 20896084
Alignment:
Q  419 ttttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||    
T  20896039 ttttgttttttaaaatagtccttgggcccactttattactgatttg 20896084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 438
Target Start/End: Complemental strand, 20897556 - 20897447
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaatt--ttgtttt 427  Q
    |||||||||||| ||||||| |||||||||||   || ||||||||||||||| ||||||          ||||| |||||||||||||||  |||||||    
T  20897556 ggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggtaa-aaaaaaattgaaatccatccctgcaaaattcattgtttt 20897458  T
Q  428 ttaaaatagtc 438  Q
    |||||||||||    
T  20897457 ttaaaatagtc 20897447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 439
Target Start/End: Complemental strand, 19275961 - 19275930
Alignment:
Q  408 tccctgcaaaattttgttttttaaaatagtcc 439  Q
    ||||||||||||||||||||||||||||||||    
T  19275961 tccctgcaaaattttgttttttaaaatagtcc 19275930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 440
Target Start/End: Original strand, 3276437 - 3276478
Alignment:
Q  401 aaattcatccctgcaaaa--ttttgttttttaaaatagtcct 440  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  3276437 aaattcatccctgcaaaattttttgttttttaaaatagtcct 3276478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 20391212 - 20391266
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||| ||||||||||||||||| |||||||||||   || |||||||||||||||    
T  20391212 aaggttaaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtcc 20391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 29291451 - 29291497
Alignment:
Q  418 attttgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||| |||||||||||||  |||| ||||||||||||||||||||    
T  29291451 attttgatttttaaaatagtatttggactcactttcttgctgatttg 29291497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 3276356 - 3276299
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttg 385  Q
    |||||||||||||| ||||||| |||||||||||| |  |||| |||||| |||||||    
T  3276356 aaggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccttg 3276299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 23502235 - 23502288
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtc 381  Q
    |||||||||||||| ||||||| |||||||||||| |  |||| ||||||||||    
T  23502235 aaggctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtc 23502288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 16995530 - 16995589
Alignment:
Q  407 atccctgcaaaatttt--gttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    ||||||| ||||||||  ||||||||||| ||||||||| | || |||||||||||||||    
T  16995530 atccctgtaaaattttttgttttttaaaaaagtccttggccccattttcttgctgatttg 16995589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 17000336 - 17000284
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||| |||||||| ||||||||| |   ||||||||||||||||||    
T  17000336 ggctaaaatatacttttggtccctgcaaatgtagtgagtttgggttttggtcc 17000284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 26419609 - 26419649
Alignment:
Q  424 ttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  26419609 ttttttaaaatagtccctgggcgcactttcttgttgatttg 26419649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 34995113 - 34995173
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||||||||| | |||||||||||  ||| |||| |||||||| | ||||||    
T  34995113 aggctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggtaa 34995173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 344936 - 344996
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  344936 aggctcaaatatgattttggtccctgcaaatatggcgagtttgggttttggtccctggtaa 344996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 376429 - 376381
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggtttt 377  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  376429 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 458
Target Start/End: Complemental strand, 345957 - 345826
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaannnnnnnnnngaaattcatccctgcaaaa--ttttgttt 426  Q
    ||||||||||||| ||||||| |||||||||||  ||| ||||||||||||||| | ||||          |||||  ||||||||||||  ||||||||    
T  345957 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctagtaattttttttttgaaatcaatccctgcaaaattttttgttt 345858  T
Q  427 tttaaaatagtccttgggctcactttcttgct 458  Q
    |||||||  |||||| | | ||||||||||||    
T  345857 tttaaaaaggtccttagacacactttcttgct 345826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 522
Target Start/End: Original strand, 374335 - 374529
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-nnnnnnnnnngaaattcatccctgcaaa--attttgttt 426  Q
    |||||||||||| ||||| | |||||||||||  ||||||||||||||||||| | ||||           ||||| ||||||||||||   ||||||||    
T  374335 ggctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtcccttgtaatttttttttttgaaatccatccctgcaaatttttttgttt 374434  T
Q  427 tttaaaatagtccttgggctcactttcttgctgatttgtcccttttatgtttatgtggcagatacttactgtaccaatttgaacacgtggcgcaca 522  Q
    ||||||||||||||||| | ||||||  || ||||||| |   ||| || ||| ||||||| | || | |||||||| |||||||| |||||||||    
T  374435 tttaaaatagtccttggtcccactttactgatgatttggctagtttttgcttaggtggcag-ttctgattgtaccaacttgaacacatggcgcaca 374529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 10315 - 10374
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||||||||| |||||||||||  ||| |||| |||||||||||||||||    
T  10315 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaa 10374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 11583 - 11522
Alignment:
Q  328 aaggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||||| ||||||| |||||||||||  ||  ||||||||||||||| ||||||    
T  11583 aaggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaa 11522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 464
Target Start/End: Original strand, 9921 - 10063
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa-----nnnnnnnnnngaaattcatccctgcaaaa--ttt 421  Q
    ||||||||||||||||||| | |||||||||||  ||||||||| ||||||||| ||||||               ||| ||||||||| |||||  |||    
T  9921 aggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaaattttttttttttttgaatttcatccctacaaaattttt 10020  T
Q  422 tgttttttaaaatagtccttgggctcactttcttgctgatttg 464  Q
    | |||||||||| ||||||||| ||||||||||||||||||||    
T  10021 tattttttaaaaaagtccttggactcactttcttgctgatttg 10063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 490 - 431
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    |||||||||||| ||||||| |||||||||||   |||||||||||||||||| ||||||    
T  490 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 42813 - 42762
Alignment:
Q  331 gctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtcc 42762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 1931 - 1985
Alignment:
Q  400 gaaattcatccctgcaaaatttt--gttttttaaaatagtccttgggctcacttt 452  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||    
T  1931 gaaattcatccatgcaaaattttttgttttttaaaatagtccttggacccacttt 1985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 1194 - 1142
Alignment:
Q  330 ggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtcc 382  Q
    |||||||||||  |||||||  ||||||||||| |||||||| ||||||||||    
T  1194 ggctaaaatatatttttggtctctgcaaatatggcgagtttgagttttggtcc 1142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 4040 - 4100
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || |||||||||||| |  |||| |||||| |||||||||||    
T  4040 aggctaaaatatggttttagtccctgcaaatatgtctcgttttggttttagtccttggtaa 4100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 19222 - 19282
Alignment:
Q  329 aggctaaaatatgcttttggttcctgcaaatatgacgagtttgggttttggtccttggtaa 389  Q
    ||||||||||||| |||| || |||||||||||| |  |||| |||||| |||||||||||    
T  19222 aggctaaaatatggttttagtccctgcaaatatgtctcgttttggttttagtccttggtaa 19282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University