View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18694_low_8 (Length: 422)

Name: NF18694_low_8
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18694_low_8
NF18694_low_8
[»] chr4 (2 HSPs)
chr4 (1-391)||(20760620-20761014)
chr4 (1-391)||(20767011-20767405)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 20760620 - 20761014
Alignment:
Q  1 atttatttttacaatcataacataaattactgtaactggaaatgttaaaacgattgctnnnnnnnttgattggaacgtgtt-aaaattgaaagtggacaa 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||       |||||||||||||||| ||||||||||||||||||    
T  20760620 atttatttttacaatcataacataaattactgtaaatggaaatgttaaaaccattgctaaaaaaattgattggaacgtgttgaaaattgaaagtggacaa 20760719  T
Q  100 taaataatttgggtgcatcaagttgggttcgtttgtctcgttaacgtcacaaacaatgatacaaaagaaggaaaatgtcttttcatttggtcattttccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20760720 taaataatttgggtgcatcaagttgggttcgtttgtctcgttaacgtcacaaacaatgatacaaaagaaggaaaatgtcttttcatttggtcattttccc 20760819  T
Q  200 gcttaagaata---taactttgagtatcaaaactgtccaaaaatttatatatgaatttatgaaaactccaaaatttcaccatctcttcttgaagattacg 296  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20760820 gcttaagaatatagtaactttgagtatcaaaactgtccaaaaatttatatataaatttatgaaaactccaaaatttcaccatctcttcttgaagattacg 20760919  T
Q  297 aagcatatgaaacgatattcttagggactgtttggatgatactnnnnnnnncacacacatcatcgctagtataagacaattatattctagattaa 391  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  20760920 aagcatatgaaacgatattcttagggactgtttggatgatactaaaaaaaacacacacatcatcgctagtataagacaattatattctagattaa 20761014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 20767011 - 20767405
Alignment:
Q  1 atttatttttacaatcataacataaattactgtaactggaaatgttaaaacgattgctnnnnnnnttgattggaacgtgtt-aaaattgaaagtggacaa 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||       |||||||||||||||| ||||||||||||||||||    
T  20767011 atttatttttacaatcataacataaattactgtaaatggaaatgttaaaaccattgctaaaaaaattgattggaacgtgttgaaaattgaaagtggacaa 20767110  T
Q  100 taaataatttgggtgcatcaagttgggttcgtttgtctcgttaacgtcacaaacaatgatacaaaagaaggaaaatgtcttttcatttggtcattttccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20767111 taaataatttgggtgcatcaagttgggttcgtttgtctcgttaacgtcacaaacaatgatacaaaagaaggaaaatgtcttttcatttggtcattttccc 20767210  T
Q  200 gcttaagaata---taactttgagtatcaaaactgtccaaaaatttatatatgaatttatgaaaactccaaaatttcaccatctcttcttgaagattacg 296  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20767211 gcttaagaatatagtaactttgagtatcaaaactgtccaaaaatttatatataaatttatgaaaactccaaaatttcaccatctcttcttgaagattacg 20767310  T
Q  297 aagcatatgaaacgatattcttagggactgtttggatgatactnnnnnnnncacacacatcatcgctagtataagacaattatattctagattaa 391  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  20767311 aagcatatgaaacgatattcttagggactgtttggatgatactaaaaaaaacacacacatcatcgctagtataagacaattatattctagattaa 20767405  T

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