View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18695_high_5 (Length: 362)
Name: NF18695_high_5
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18695_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 49450727 - 49451078
Alignment:
| Q |
2 |
tggtgtctatgtcaagaataatgctagcaacacattatctaacacgtttttctcaacacactctaatcggttgaaatttaaacaagtctcgctaaattta |
101 |
Q |
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| T |
49450727 |
tggtgtctatgtcaagaataatgctagcaacacattatctaacacgtttttctcaacacactataattggttgaaatttaaacaagtctcgctaaattta |
49450826 |
T |
|
| Q |
102 |
tgtggtgtctaaataatttcgtgggatccatttgaatttgaacaaagtagagagatagtgtattattagcacatggaagtggttcatagatcaccataca |
201 |
Q |
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| T |
49450827 |
tgtggtgtctaaataatttcgtgggatccatttgaattttaacaaagtagagagatagtgtattattagcacatggaagtggttcatagatcaccataca |
49450926 |
T |
|
| Q |
202 |
tatgcccagatttgaaaatctacatcagtgggaatttaggagtaggcgacgactctcaactcccacaat-nnnnnnnnnnnnntagtaactagaaagcag |
300 |
Q |
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| T |
49450927 |
tatgcccagatttgaaaatctacatcagtgggaatttaggagtaggcgacgactctcaactcccacaataaaaaatttaaaaatagtaactagaaagcag |
49451026 |
T |
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| Q |
301 |
tgcatgcaacaattaacatgaaataaattgtgaattaagagacgtacctatg |
352 |
Q |
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| T |
49451027 |
tgcatgcaataattaacatgaaataaattgtgaattaagaaacgtacctatg |
49451078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 47949055 - 47949117
Alignment:
| Q |
93 |
ctaaatttatgtggtgtctaaataatttcgtgggatccatttgaatttgaacaaagtagagag |
155 |
Q |
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| T |
47949055 |
ctaaatttatgtggggcctacatgatttcgtgggatccaattgaatttcaaccaattagagag |
47949117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 9705350 - 9705304
Alignment:
| Q |
94 |
taaatttatgtggtgtctaaataatttcgtgggatccatttgaattt |
140 |
Q |
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|||||| |||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
9705350 |
taaattcatgtggggtctacataattttgtgggatccatttgaattt |
9705304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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