View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18695_low_1 (Length: 643)
Name: NF18695_low_1
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18695_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 249 - 627
Target Start/End: Original strand, 29072029 - 29072403
Alignment:
| Q |
249 |
agaaatatgttatgcatgtacctccatcatagcttgaacccaataacgacgattgattgaattgacaccaatgacagtttttgtggggtgtttaacaact |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29072029 |
agaaatatgttatgcatgtacctccatcatagcttgaacccaataacgacgattgattgaattgacaccaatgacagtttttgtggggtgtttaacaact |
29072128 |
T |
|
| Q |
349 |
tggtagagaagccataaatggtatgcaaccattacaaagaggccactagggactaatatgagatcaagaattttcttgtccatttaattttatggaagca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29072129 |
tggtagagaagccataaatggtatgcaaccattacaaagaggccactagggactaatatgagatcaagaattttcttgtccatttaattttatagaagca |
29072228 |
T |
|
| Q |
449 |
atgtaatgtattaacaagaaagagatgaaatttgattcttagattgaatctgatcaattcgtcgtgtgtatctatctatttttacgtgttatatggaaag |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29072229 |
atgtaatgtattaacaagaaagagatgaaatttgattcttagattgaatctgatcaattcgtcgtgtg----tatctatttttacgtgttatatggaaag |
29072324 |
T |
|
| Q |
549 |
attgaaacagaagaagagagatatgagacagtacaagcgttacacgggtgttgccttgtttgtttggtaaccgaaatga |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29072325 |
attgaaacagaagaagagagatatgagacagtacaagcgttacacgggtgttgccttgtttgtttggtaaccgaaatga |
29072403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University