View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18695_low_10 (Length: 289)
Name: NF18695_low_10
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18695_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 31727442 - 31727703
Alignment:
| Q |
13 |
aagaatattggtttgggtgagagaagaagattcaacaaagaattatcagctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagt |
112 |
Q |
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| T |
31727442 |
aagaaaattggtttgggtgagagaagaagattcaacaaagaattatcagctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagt |
31727541 |
T |
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| Q |
113 |
gaatctaaacataatatccaagtctattatactgtagtgtattgtgaatgtattgtgaccctaccgtaatattcaagtctatgatttgtccaatcttgtg |
212 |
Q |
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| T |
31727542 |
gaatctaaacataatatccaagtctattatactgtagtctattgtgaatgtattgtgaccctaccgtaatattcaagtctatgatttgtccaatcttgtg |
31727641 |
T |
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| Q |
213 |
atgtttctgcaacagttgacttcatttctcctccatatgatttgggttttaacatattttgt |
274 |
Q |
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| T |
31727642 |
atgtttctgcaacagttgacttcatttctcctccatatgatttgggttttaacatattttgt |
31727703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 31720380 - 31720457
Alignment:
| Q |
61 |
gctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtctat |
139 |
Q |
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| T |
31720380 |
gctgtttaaactctaaatttccaatgatatttttaattttgtggtgtagtatgaacct-atcataaaatccaagtctat |
31720457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 31714541 - 31714617
Alignment:
| Q |
61 |
gctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtcta |
138 |
Q |
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| T |
31714541 |
gctgtttaaactctaaatttccattgatatttttaattttgtggtgtagtatgaacct-atcataatatccaagtcta |
31714617 |
T |
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