View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18695_low_12 (Length: 230)
Name: NF18695_low_12
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18695_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 23187506 - 23187703
Alignment:
| Q |
19 |
atcatggagggggttatcatggaggtggtggtggaggtggcggcggagggtgttgaggaggcggtggaggcttctgatatatagttggcggtattttgtt |
118 |
Q |
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| T |
23187506 |
atcatggagggggtcatcatggaggtggtggtggaggtggcggcggagggtgttgagaagacggtggaggcttctgatatatagttggcggtattttgtt |
23187605 |
T |
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| Q |
119 |
ggattgtatttacttagttgacatgccaccttagttatacctctttatcttatgtgaaataaatcgtgttgtacttctattcaaattcatgttatact |
216 |
Q |
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| T |
23187606 |
ggattgtatttacttagttgacatgccactttaattatacctctttatcttatgtgaaataaatcgtgtagtacttctattcaaattcatgttatact |
23187703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 23178968 - 23179170
Alignment:
| Q |
13 |
atggacatcatggagggggttatcatggaggtggtggtggaggtggcggcggagggtgttgaggaggcggtggaggcttctgatatatagttggcgg--- |
109 |
Q |
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| T |
23178968 |
atggtcatcatggagggggtcatcatggagatggtggtggaggtggtggcggtgggtgttgaggtggtggtggaggcttctgagatatggttggaggtat |
23179067 |
T |
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| Q |
110 |
--tattttgttggattgtat----ttacttagttgacatgccaccttagttatacctctttatcttatgtgaaataaatcgtgttgtacttctattcaaa |
203 |
Q |
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| T |
23179068 |
tctattttgttggattgtatttacttacttatttgacatgccaccttaatta--------tatcttatgtgaaataaatcttgttgtacttctattcaaa |
23179159 |
T |
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| Q |
204 |
ttcatgttata |
214 |
Q |
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| T |
23179160 |
ttgatgttata |
23179170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 23171563 - 23171671
Alignment:
| Q |
43 |
gtggtggtggaggtggcggcggagggtgttgaggaggcggtggaggcttctgatatatagttggcggtattttgttggattgtatttacttagttgacat |
142 |
Q |
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|||| ||||||||||| ||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23171563 |
gtggaggtggaggtggtggcggagggtgttgaggtggcgttggaggcttctgagatatggttggcggtattttgttggattgtatttacttagttgacat |
23171662 |
T |
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| Q |
143 |
gccacctta |
151 |
Q |
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||||||||| |
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| T |
23171663 |
gccacctta |
23171671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 23171715 - 23171776
Alignment:
| Q |
153 |
ttatacctctttatcttatgtgaaataaatcgtgttgtacttctattcaaattcatgttata |
214 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |
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| T |
23171715 |
ttatacctctttatcttatgtgaaataaaccatgttgtacttctattcaaattgatgttata |
23171776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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