View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18695_low_2 (Length: 616)

Name: NF18695_low_2
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18695_low_2
NF18695_low_2
[»] chr8 (8 HSPs)
chr8 (18-606)||(3054293-3054881)
chr8 (435-606)||(3033848-3034019)
chr8 (435-606)||(3041887-3042059)
chr8 (36-149)||(3039871-3039983)
chr8 (480-606)||(3064419-3064545)
chr8 (455-606)||(3072114-3072265)
chr8 (508-604)||(3066458-3066554)
chr8 (533-606)||(3068443-3068516)


Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Original strand, 3054293 - 3054881
Alignment:
Q  18 aaatgaacctctactatgtaggtcttatgatacatcaatattttgtttgttttcataattccacttttgaatctatatatcttagctaaggatccaaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3054293 aaatgaacctctactatgtaggtcttatgatacatcaatattttgtttgttttcataattccacttttgaatctatatatcttagctaaggatccaaaaa 3054392  T
Q  118 ctggattttgaaaagggaaaaccaatttagaagaacaaaaatatagttcatatttttaaccatgcaaagtccactttaaaagaacacaaatcctttgttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3054393 ctggattttgaaaagggaaaaccaatttagaagaacaaaaatatagttcatatttttaaccatgcaaagtccactttaaaagaacacaaatcctttgttg 3054492  T
Q  218 agattgtaaattgnnnnnnnnnnnnnnnnnatcaaaaatggaagtatatcatacgtctgttatgtccagatggttaaaccaacttatgacttatgagttg 317  Q
    ||||||||||||                  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3054493 agattgtaaattattttcatttttatttttatcaaaaatggaagtatatcatacgtctgttatatccagatggttaaaccaacttatgacttatgagttg 3054592  T
Q  318 accaggtccaagtctacacaaagattattcagcagagtaatgactaagtgatgaaatttttatggacaaaaacaattgctattttctataaaaatcatat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3054593 accaggtccaagtctacacaaagattattcagcagagtaatgactaagtgatgaaatttttatggacaaaaacaattgctattttctataaaaatcatat 3054692  T
Q  418 gaataaaattgagatagaatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3054693 gaataaaattgagatagaatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaac 3054792  T
Q  518 caaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3054793 caaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg 3054881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 435 - 606
Target Start/End: Original strand, 3033848 - 3034019
Alignment:
Q  435 aatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcca 534  Q
    |||||||||||||||||| ||||||| ||| ||||||| || |  || ||||||||||||||| ||  |||| ||||||||||||| |  ||||||||||    
T  3033848 aatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagcca 3033947  T
Q  535 ttggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg 606  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  3033948 ttggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcctttg 3034019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 606
Target Start/End: Original strand, 3041887 - 3042059
Alignment:
Q  435 aatctaaacatggcttccactctactgcttcccttt-cttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcc 533  Q
    ||||||||||| |||||| ||||||| ||| ||||| || || |  || ||||||||||||||||||  |||| ||||||||||||| |  |||||||||    
T  3041887 aatctaaacatcgcttcctctctactcctttccttttctcctatactcgctgattcttcaatccatcggtgttgtagctcaaaccaatagtactatagcc 3041986  T
Q  534 attggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg 606  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  3041987 attggtgattcttttactgctgacaccagcaactctacatggttactttcaccttctggtgactttgcctttg 3042059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 3039871 - 3039983
Alignment:
Q  36 taggtcttatgatacatcaatattttgtttgttttcataattccacttttgaatctatatatcttagctaaggatccaaaaactggattttgaaaaggga 135  Q
    ||||| |||||||||||||||||||| ||||||||||||   || |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  3039871 taggttttatgatacatcaatatttt-tttgttttcatataaccccttttgaatctatataacttagctaagtatcaaaaaactggattttgaaaaggga 3039969  T
Q  136 aaaccaatttagaa 149  Q
    ||||||||||||||    
T  3039970 aaaccaatttagaa 3039983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 480 - 606
Target Start/End: Complemental strand, 3064545 - 3064419
Alignment:
Q  480 tcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgc 579  Q
    ||||||||||| |||||||||  |||| |||||||||||||||  || |||| |||||||||||||||||||||  |||| || | |||| |||||||||    
T  3064545 tcactgattctgcaatccatctgtgttgtagctcaaaccaaaagtaccatagtcattggtgattcttttactgcacaaaccagtacctctccatggttgc 3064446  T
Q  580 tttccccttctggtgactttgcctttg 606  Q
    |||| ||||||||||||||||||||||    
T  3064445 tttcaccttctggtgactttgcctttg 3064419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 606
Target Start/End: Complemental strand, 3072265 - 3072114
Alignment:
Q  455 tctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagccattggtgattcttttactgct 554  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||  |||| |||||||||||||||  || |||||   |||||||| |  || | |     
T  3072265 tctacttcttcccttttttctcttctcactgattcttcaatccatcagtgttgtagctcaaaccaaaagtaccatagcagctggtgattttcatatttca 3072166  T
Q  555 gaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg 606  Q
    ||||| | || |||| ||||||||||||| ||||||||||||||||||||||    
T  3072165 gaaaccaacacctctccatggttgctttcaccttctggtgactttgcctttg 3072114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 508 - 604
Target Start/End: Complemental strand, 3066554 - 3066458
Alignment:
Q  508 tagctcaaaccaaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctt 604  Q
    |||||||||||||||  |||||||||||||||||||||||||||||  |||| | || |||| |||||||| |||| ||||||||||||||| ||||    
T  3066554 tagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttcctt 3066458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 606
Target Start/End: Complemental strand, 3068516 - 3068443
Alignment:
Q  533 cattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttg 606  Q
    ||||||||||||||||||||| || ||  |||||||| ||||||||||||| ||||||||||||||||||||||    
T  3068516 cattggtgattcttttactgcagataccggcaactctccatggttgctttcaccttctggtgactttgcctttg 3068443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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