View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18695_low_3 (Length: 471)

Name: NF18695_low_3
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18695_low_3
NF18695_low_3
[»] chr5 (7 HSPs)
chr5 (19-291)||(29043722-29043994)
chr5 (339-460)||(29043996-29044117)
chr5 (266-321)||(20507945-20508000)
chr5 (266-321)||(20504396-20504451)
chr5 (266-311)||(659714-659759)
chr5 (266-307)||(661244-661285)
chr5 (266-311)||(21947771-21947816)
[»] chr6 (1 HSPs)
chr6 (266-321)||(1072339-1072394)
[»] chr3 (3 HSPs)
chr3 (266-321)||(32218837-32218892)
chr3 (266-321)||(48362130-48362185)
chr3 (266-311)||(32264534-32264579)
[»] chr2 (2 HSPs)
chr2 (266-321)||(40032530-40032585)
chr2 (266-298)||(35107019-35107051)
[»] chr1 (1 HSPs)
chr1 (267-321)||(38925942-38925996)
[»] chr4 (3 HSPs)
chr4 (266-321)||(22780896-22780951)
chr4 (266-321)||(22783261-22783316)
chr4 (257-321)||(36921978-36922041)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 29043722 - 29043994
Alignment:
Q  19 attctgaaatggacgagagaacgaggaccactttctttttcttctttcagaaagaaatatggtacaagtcaaaattttcgaacaaaaaaccaatatacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  29043722 attctgaaatggacgagagaacgaggaccactttctttttcttctttcagaaagaaatatggtagaagttaaaattttcgaacaaaaaaccaatatacaa 29043821  T
Q  119 atcccacgnnnnnnncttgctaattattttttgttttgttctattgtactagtaactaccaaaaagtatttgtagggtcgataattctagatgcacaagt 218  Q
    ||||||||       |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29043822 atcccacgtttttttcttgctaattatttcttgttttcttctactgtactagtaactaccaaaaagtatttgtagggtcgataattctagatgcacaagt 29043921  T
Q  219 tcatgaaactaacatccattcaacaattaaatgaatatataattaacgtgagagttaacttaaaattaggtta 291  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  29043922 ttatgaaactaacatccattcaacaattaaatgaatatataattaatgtgagagttaacttaaaatcaggtta 29043994  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 339 - 460
Target Start/End: Original strand, 29043996 - 29044117
Alignment:
Q  339 gacatattcttaaaagcaaaaataaatacgaattcaataactcagaaattcaacattctcgcatctcccccaataggcaacctcagatacataaacgaaa 438  Q
    |||| ||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29043996 gacacatttttaaaagcaaaaataagtacgaatttaagaactcagaaattcaacattctcgcatctcccccaatagacaacctcagatacataaacgaaa 29044095  T
Q  439 tcataccggtcctacaattcat 460  Q
    ||||||||||||||||||||||    
T  29044096 tcataccggtcctacaattcat 29044117  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 20508000 - 20507945
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||    
T  20508000 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagttgggcaa 20507945  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 20504451 - 20504396
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||    
T  20504451 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagctgggcaa 20504396  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 659714 - 659759
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgat 311  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  659714 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 659759  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 661285 - 661244
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggta 307  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  661285 gtgagagttaacttaaaatcaggttctgcagaaatcgtggta 661244  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 21947771 - 21947816
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgat 311  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  21947771 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 21947816  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 1072394 - 1072339
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||    
T  1072394 gtgagagttaacttaaaatcaggttctgcagaaatcgtggtacgatggttgggcaa 1072339  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 32218837 - 32218892
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||  ||||||||    
T  32218837 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgattgggcaa 32218892  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 48362185 - 48362130
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||||| || |||| |||||| ||||| |||||||||    
T  48362185 gtgagagttaacttaaaatcaggttctgtagaaatcgtggcacgatggttgggcaa 48362130  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 32264579 - 32264534
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgat 311  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  32264579 gtgagagttaacttaaaatcaggttttgcagaaatcgtggcacgat 32264534  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 40032585 - 40032530
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||||| ||||||| |||||| ||||| | |||||||    
T  40032585 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctgggcaa 40032530  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 35107019 - 35107051
Alignment:
Q  266 gtgagagttaacttaaaattaggttatgcagaa 298  Q
    |||||||||||||||||||||||||||| ||||    
T  35107019 gtgagagttaacttaaaattaggttatggagaa 35107051  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 38925996 - 38925942
Alignment:
Q  267 tgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    |||||||||||||||||| |||||  |||||| |||||||||||| | |||||||    
T  38925996 tgagagttaacttaaaatcaggttccgcagaaatcgtggtacgatggctgggcaa 38925942  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 22780951 - 22780896
Alignment:
Q  266 gtgagagttaacttaaaattagg-ttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||| || ||||||| |||||||||||||| |||||||    
T  22780951 gtgagagttaacttaaaatcaggtttctgcagaa-tcgtggtacgatagctgggcaa 22780896  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 22783316 - 22783261
Alignment:
Q  266 gtgagagttaacttaaaattagg-ttatgcagaactcgtggtacgatagttgggcaa 321  Q
    ||||||||||||||||||| ||| || ||||||| |||||||||||||| |||||||    
T  22783316 gtgagagttaacttaaaatcaggtttctgcagaa-tcgtggtacgatagctgggcaa 22783261  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 36922041 - 36921978
Alignment:
Q  257 ataattaacgtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 321  Q
    |||| ||| ||||||||||||||||||| ||||| |||| || |||||||||||| | |||||||    
T  36922041 ataaataatgtgagagttaacttaaaatcaggttctgca-aaatcgtggtacgatggctgggcaa 36921978  T

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