View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18695_low_4 (Length: 372)

Name: NF18695_low_4
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18695_low_4
NF18695_low_4
[»] chr5 (1 HSPs)
chr5 (1-357)||(43572160-43572516)
[»] chr7 (1 HSPs)
chr7 (23-128)||(48429214-48429321)
[»] chr6 (1 HSPs)
chr6 (33-128)||(20867357-20867451)
[»] chr2 (2 HSPs)
chr2 (23-120)||(29492938-29493036)
chr2 (152-264)||(4522788-4522899)
[»] chr3 (3 HSPs)
chr3 (46-129)||(7701875-7701959)
chr3 (40-128)||(11013574-11013662)
chr3 (61-112)||(33720621-33720672)
[»] chr1 (3 HSPs)
chr1 (23-128)||(6854540-6854649)
chr1 (61-125)||(52976008-52976072)
chr1 (61-120)||(52681769-52681828)
[»] chr4 (3 HSPs)
chr4 (2-110)||(56518493-56518604)
chr4 (87-131)||(25244756-25244800)
chr4 (86-126)||(13417413-13417453)
[»] chr8 (1 HSPs)
chr8 (61-120)||(36073942-36074001)


Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 43572516 - 43572160
Alignment:
Q  1 ctttgtgaactctaatcaaaagactgcagatatttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572516 ctttgtgaactctaatcaaaagactgcagatatttaagcaaaagtttggaaagacccatctttgagcatttgataagcaagatgggcatgatagatatct 43572417  T
Q  101 atgcaccaacttgagaggggtgttggaatgtgtacctgtgtgtgtgttttctttctagaaggatccacatgattcttttggtcaatacattaactttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572416 atgcaccaacttgagaggggtgttggaatgtgtacctgtgtgtgtgttttctttctagaaggatccacatgattcttttggtcaatacattaactttcta 43572317  T
Q  201 tttattgttcatttattcttattccctaaaattctcattgtgaattattatcacttattgtaatcctcaccccatttctttctacaatcaccaccataga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572316 tttattgttcatttattcttattccctaaaattctcattgtgaattattatcacttattgtaatcctcaccccatttctttctacaatcaccaccataga 43572217  T
Q  301 ctagaatgcttacctgctatacatctgtctatccatctaagtgttcggtacatagct 357  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572216 ccagaatgcttacctgctatacatctgtctatccatctaagtgttcggtacatagct 43572160  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 48429214 - 48429321
Alignment:
Q  23 actgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttga-gagggg 120  Q
    ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | ||||    
T  48429214 actgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagacaagttgggcatgatagatatctatgcaccaacttgaggggggg 48429313  T
Q  121 tgttggaa 128  Q
    ||||||||    
T  48429314 tgttggaa 48429321  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 20867357 - 20867451
Alignment:
Q  33 tttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttggaa 128  Q
    ||||| |||||| ||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  20867357 tttaaccaaaagcttggcgagacccgtcgttgagcatttgataagcaagttgggcatgatagatatctatgcaccaactt-aggggggtgttggaa 20867451  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 29493036 - 29492938
Alignment:
Q  23 actgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 120  Q
    ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||| ||||    
T  29493036 actgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagacaagttgggcatgatagatatctatgcaccaacttgagggggg 29492938  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 4522899 - 4522788
Alignment:
Q  152 tttctagaaggatccacatgattcttttggtcaatacattaactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattat 251  Q
    ||||||||||||||||||| |||||| | | |||| ||| | ||||||| | ||||| | |||||| ||||| |||||||||||||||| ||||||||||    
T  4522899 tttctagaaggatccacataattcttatagccaatgcat-atctttctactcattgtccctttatttttatttcctaaaattctcattgagaattattat 4522801  T
Q  252 cacttattgtaat 264  Q
    |||||||||||||    
T  4522800 cacttattgtaat 4522788  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 7701875 - 7701959
Alignment:
Q  46 ttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttga-gaggggtgttggaat 129  Q
    |||||||||||  ||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  7701875 ttggcaagacctgtctttgagcatttgataggcatgttgggcatgatagacatctatgcaccaacttgaggaggggtgtcggaat 7701959  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 11013574 - 11013662
Alignment:
Q  40 aaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttggaa 128  Q
    ||||| |||| |||||| | |||||||||||| |||  |||| |||||||||| ||||||||||||||||||||||  |||||| ||||    
T  11013574 aaaagcttggtaagaccaacctttgagcatttaatagacaagttgggcatgattgatatctatgcaccaacttgaggagggtgtgggaa 11013662  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 33720621 - 33720672
Alignment:
Q  61 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaactt 112  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||    
T  33720621 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaactt 33720672  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 6854649 - 6854540
Alignment:
Q  23 actgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatag--atatctatgcaccaacttga-gagg 118  Q
    ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||   ||| ||||||||||||  |||||||||||||||||||| | ||    
T  6854649 actgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagataagttgggcatgatagatatatctatgcaccaacttgaggggg 6854550  T
Q  119 ggtgttggaa 128  Q
    ||||||||||    
T  6854549 ggtgttggaa 6854540  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 52976072 - 52976008
Alignment:
Q  61 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttg 125  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| | |||||||    
T  52976072 tttgagcatgtcataagcaagttgggcatgattgatatctatgcaccaacttgagggaggtgttg 52976008  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 52681828 - 52681769
Alignment:
Q  61 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 120  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  52681828 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaacttgagggggg 52681769  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 56518493 - 56518604
Alignment:
Q  2 tttgtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggc--atgatagatat 98  Q
    ||||||| ||||| |||| | ||||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||||||| ||| |  |||||||||||    
T  56518493 tttgtgacctctagtcaacaaactgcggatatcttaaccaaaagattggcaagacccgtctttgagcatttgataagcaagttggccatatgatagatat 56518592  T
Q  99 ctatgcaccaac 110  Q
    | ||| ||||||    
T  56518593 cgatgaaccaac 56518604  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 25244800 - 25244756
Alignment:
Q  87 catgatagatatctatgcaccaacttgagaggggtgttggaatgt 131  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||    
T  25244800 catgattgatctctatgcaccaacttgagaggggtgttgaaatgt 25244756  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 13417453 - 13417413
Alignment:
Q  86 gcatgatagatatctatgcaccaacttgagaggggtgttgg 126  Q
    |||| ||||||||||||||| ||||||||| ||||||||||    
T  13417453 gcatcatagatatctatgcatcaacttgaggggggtgttgg 13417413  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 36074001 - 36073942
Alignment:
Q  61 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 120  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  36074001 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaacttgagggggg 36073942  T

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