View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18695_low_6 (Length: 354)
Name: NF18695_low_6
Description: NF18695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18695_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 26508712 - 26508377
Alignment:
| Q |
3 |
atcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtaccgaacgtgcaaattcacctag |
102 |
Q |
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| T |
26508712 |
atcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtaccgaacgtgcaaattcacctag |
26508613 |
T |
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| Q |
103 |
caggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagaggacatgagtttgttgtcttatgt |
202 |
Q |
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| T |
26508612 |
caggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagaggacatgagtttgttgtcttatgt |
26508513 |
T |
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| Q |
203 |
ttctgctggtggtgctttagcttcgtcgatcttcatcgtttctttgttgtggaatggtgcaattgatggaacagggtttcatggtaaaggaagggttttt |
302 |
Q |
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| T |
26508512 |
ttctgctggtggtgctttagcttcttcgatcttcatcgtttctttgttgtggaatggtgcaattgatggaacagggtttcatggaaaaggaagggttttt |
26508413 |
T |
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| Q |
303 |
agatggagtggaataccttctgctgttagttcgttt |
338 |
Q |
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| T |
26508412 |
agatggagtggaataccttctgctgttagtttgttt |
26508377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 333
Target Start/End: Complemental strand, 26481619 - 26481286
Alignment:
| Q |
3 |
atcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtaccgaacgtgcaaattcacctag |
102 |
Q |
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|||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| || |||| ||| ||| |
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| T |
26481619 |
atcatcatgaatgttgaactttatctagctgtaacaggttttcttattttagaaggagacaatctaaacaaactagtaccaaattcagaaatccacatag |
26481520 |
T |
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| Q |
103 |
caggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagaggacatgagtttgttgtcttatgt |
202 |
Q |
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|| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26481519 |
caaatataacaattggtggaacaacaatgtttactatggtcgctggtcttgttattttgcctactgttttgttagaggatttgagtttgttgtcttatgt |
26481420 |
T |
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| Q |
203 |
ttctgctggtggtgctttagcttcgtcgatcttcatcgtttctttgttgtggaatggtgcaattgatggaacagggtttcatggtaaaggaagggttttt |
302 |
Q |
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| T |
26481419 |
atctgctggtggtgctctagctgctttaatatttatcttttcattgttgtggaatggtgcaattgatggaatagggtttcatggaaaaggaagggttttt |
26481320 |
T |
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| Q |
303 |
---agatggagtggaataccttctgctgttagtt |
333 |
Q |
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| T |
26481319 |
gttaattggagtggaataccttctgctgttagtt |
26481286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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