View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18696_high_11 (Length: 248)
Name: NF18696_high_11
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_high_11 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 34788782 - 34788566
Alignment:
| Q |
32 |
aaaatacttagaagttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcc |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788782 |
aaaatacttagaagttcacaaaaggctgcttacttgtacacatctcttgtttgctccatatctccagcatcaagttcttcataaagtgcataattaatcc |
34788683 |
T |
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| Q |
132 |
taagatacacgcagaaaataataaataccactagaaaatgcaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgta |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788682 |
taagatacacgcagaaaataataaataccactagaaaatgaaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgta |
34788583 |
T |
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| Q |
232 |
ccacaaataaatatagc |
248 |
Q |
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||||||||||||||||| |
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| T |
34788582 |
ccacaaataaatatagc |
34788566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 248
Target Start/End: Original strand, 2292421 - 2292628
Alignment:
| Q |
42 |
gaagttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacac |
141 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| || || |
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| T |
2292421 |
gaagttcacaaaaggctgcttacttgtacacgtctcttgttcgctccatgtctccagcatcgagttcttcatagagtgcataattaatcctaagttatac |
2292520 |
T |
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| Q |
142 |
gcaga-aaataataaataccactagaaaatgcaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaata |
240 |
Q |
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|||| |||||||||||||||| | |||||||||||||| ||||| |||||||||||||| || |||||||||| ||||||||||||| ||||||||||| |
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| T |
2292521 |
acagacaaataataaataccacaaaaaaatgcaaaatcaataaataataaataaacaaacagataacaaaacagaattcaaatcaaacataccacaaata |
2292620 |
T |
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| Q |
241 |
aatatagc |
248 |
Q |
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|||||||| |
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| T |
2292621 |
aatatagc |
2292628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 2597576 - 2597779
Alignment:
| Q |
45 |
gttcacaaaaggctgcttacttgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacacgca |
144 |
Q |
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||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||| ||| ||||| |
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| T |
2597576 |
gttcagaaaaggctgcttacctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataactaatccaaagttacacatg |
2597675 |
T |
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| Q |
145 |
ga-aaataataaataccactagaaaatgcaaaatcactaaatgataaataaacaaaccgacaacaaaacagcattcaaatcaaacgtaccacaaataaat |
243 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| | | ||||||| ||||||||||||| ||||||| |||||| |
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| T |
2597676 |
gacaaataataaataccacaagaaaatgcaaaatcactaaataataaataaacaaacagctaccaaaacaaaattcaaatcaaacataccacagataaat |
2597775 |
T |
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| Q |
244 |
atag |
247 |
Q |
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|||| |
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| T |
2597776 |
atag |
2597779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 49279879 - 49279942
Alignment:
| Q |
66 |
tgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaat |
129 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
49279879 |
tgtacacatctcttgctcgctccatatctccagcatcaagctcttcatagagtgcatacttaat |
49279942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 49276322 - 49276386
Alignment:
| Q |
66 |
tgtacacatctcttgttcgctccatatctccagcatcaagttcttcataaagtgcataattaatc |
130 |
Q |
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||||||||||||||| ||||||||||| || || ||||| ||||||||| |||||||||||||| |
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| T |
49276322 |
tgtacacatctcttgctcgctccatatttctagtatcaaactcttcataacgtgcataattaatc |
49276386 |
T |
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