View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18696_high_3 (Length: 505)
Name: NF18696_high_3
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 43092341 - 43091866
Alignment:
| Q |
19 |
ggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgtatccttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43092341 |
ggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacatgtgttgctcaaattgtatccttaa |
43092242 |
T |
|
| Q |
119 |
agaaaatttcactcctgttaactgctctgatttttaaaatggccgatattttatcagttgtgctttcgtgtgtgtgcagtgatgttcaatcttatgaaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43092241 |
agaaaatttcactcctgttaactgctatggtttttaaaatggccgatattttgtcagttgtgttttcgtgtgtgtgcagtgatgttcaatcttatgaatt |
43092142 |
T |
|
| Q |
219 |
tatttttaacgatgaatatgttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgggataatcatttcac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
43092141 |
tatttttaacgatgaatatgttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgagataatcatttcgc |
43092042 |
T |
|
| Q |
319 |
caacttcataacaacaaacattttatctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatgga |
418 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43092041 |
caacttcataacaacaaacattttacctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatgga |
43091942 |
T |
|
| Q |
419 |
aaagtaaaattctgcaaactttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091941 |
aaagtaaaattctgcaaactttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
43091866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 43084803 - 43084703
Alignment:
| Q |
19 |
ggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgtatccttaa |
118 |
Q |
| |
|
|||||||||||| |||| ||||| || | ||||| |||| |||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
43084803 |
ggaattgcaacagtcacagatttgcagttgaatgctctgggatctttcttatctcttctggcggtgattacaacatgtgttgctcagattgtatccttaa |
43084704 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
43084703 |
a |
43084703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University