View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18696_high_6 (Length: 369)
Name: NF18696_high_6
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 56 - 354
Target Start/End: Complemental strand, 24256646 - 24256348
Alignment:
| Q |
56 |
agatttggtcaagagagagcaaactttacatcaaagaaaagattagaaacttatacaacaagtattcttatttatatgtctggaattgatttatctcata |
155 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24256646 |
agatttgggaaagagagagaaaactttacttcaaagaagagattagaaacgtatacagtaagtattcttatttatatgtctggaattgatttatctcata |
24256547 |
T |
|
| Q |
156 |
ataagttaaatggtagcatcccatctgagctaggaaacttgacaaaaattcgagcgttgaacttgtccaacaattttttaactgggagtgttccagctac |
255 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||| || |
|
|
| T |
24256546 |
ataagttaaatggtagcatcccatatgaactaggaaacttgacaagaattcgagcattgaacttgtccaacaatcttttaactgggaaagttccagcaac |
24256447 |
T |
|
| Q |
256 |
attctcaaatttggtacaggttgagagtttagatctttctttgaacatgttgagtggccgaattcctcctcagctaactggactgcactcccttgaagt |
354 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
24256446 |
attctccaatttggtacaggttgagagtttagatctttctttcaacatgttgagtggccaaattcctcctcagctaagtggattgcactaccttgaagt |
24256348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 73 - 354
Target Start/End: Complemental strand, 24241817 - 24241536
Alignment:
| Q |
73 |
agcaaactttacatcaaagaaaagattagaaacttatacaacaagtattcttatttatatgtctggaattgatttatctcataataagttaaatggtagc |
172 |
Q |
| |
|
||||| |||||| ||||||||||| | ||||||||||||||||| | | ||||||||||||||||||||||| || ||||| ||||| |||||||| || |
|
|
| T |
24241817 |
agcaacctttacttcaaagaaaaggtcagaaacttatacaacaaatgtgcttatttatatgtctggaattgacttgtctcacaataaattaaatggaagt |
24241718 |
T |
|
| Q |
173 |
atcccatctgagctaggaaacttgacaaaaattcgagcgttgaacttgtccaacaattttttaactgggagtgttccagctacattctcaaatttggtac |
272 |
Q |
| |
|
|| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| || || | |||||||||||||||| ||||||||| |
|
|
| T |
24241717 |
attccatctgagcttggaaacttgacaagaattcgagcattgaacttgtccaacaactttttcaccggaaaaattccagctacattctctgatttggtac |
24241618 |
T |
|
| Q |
273 |
aggttgagagtttagatctttctttgaacatgttgagtggccgaattcctcctcagctaactggactgcactcccttgaagt |
354 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
24241617 |
aggttgagagtttagatctttctttcaacatgttgagtggccaaattcctcctcggctaagtggattgcactaccttgaagt |
24241536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University