View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18696_high_9 (Length: 269)
Name: NF18696_high_9
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 50172894 - 50173135
Alignment:
| Q |
18 |
aaaactttcttttatctctttttccgtctcgaaaactacattgattttgaacttattaaaaatgttccgttattttgttgcaaacacagtttttgaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50172894 |
aaaactttcttttatctctttttccgtctcgaaaactacattgattttgaacttattaaaaatgttccgttattttgttgcaaacacagtatttgaactt |
50172993 |
T |
|
| Q |
118 |
tacagactacttctgcttcacaatttttattatttttgggttttggttggttggtgtgtggaatctcacatgccaattgtaatactagaatttggagtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50172994 |
tacagactacttctgcttcacaatttttattatttttgggttttggttggttggtgtgtggaatctcacatgccaattgtaatactagaatttggagtgg |
50173093 |
T |
|
| Q |
218 |
ttaagatctatcgtaaagtgcagtttaccccatctacctatg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50173094 |
ttaagatctatcgtaaagtgcagtttaccccatctacctatg |
50173135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University