View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18696_low_1 (Length: 616)
Name: NF18696_low_1
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 50173113 - 50173718
Alignment:
| Q |
1 |
gcagtttaccccatctacctatgggtctgcggttttgtctatttagccataattgggtgatgagatcccatcgtgcattattggaattcatccaccctaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50173113 |
gcagtttaccccatctacctatgggtctgtggttttgtctatttagccataattgggtgatgagatcccatcgtgcattattggaattcatccaccctaa |
50173212 |
T |
|
| Q |
101 |
ttatataactggagtccgttttgttgagctatatcaatgagaaatcattattaccttttcattccttagtgcttgttatattctattcggagtactaaac |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50173213 |
ttatataactggagtccgttatgttgagctatatcaatgagaaatcattattaccttttcattccttagtgcttgttatattctattcggagtactaaac |
50173312 |
T |
|
| Q |
201 |
tagaactatgtttttaatatatggcagagtaagcctgcgtctggtgaagggtctactacttcaaatgctcttccagcgaaggtgagagaagtttgatgtg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50173313 |
tagaactatgtttttaatatatggcagagtaagcctgcgtctggtgaagggtctactacttcaaatgctcctccagcgaaggtgagagaagtttgatgtg |
50173412 |
T |
|
| Q |
301 |
ttatgattattgctcatgttactatcatttttgttgttatatttgctgggatatagtaaagaaggatattactcatttacaggaactgaaaacagtatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50173413 |
ttatgattattgctcatgttactatcatttttgttgttatatttgctgggatatagtaaagaaggatattactcatttacaggaactgaaaacagtatct |
50173512 |
T |
|
| Q |
401 |
aacaattatgtattctttgcaggtcccacagacgagtgctgctcctacttcaannnnnnnagtgtctgtttcacctcaagctcctgctgcaactgcggca |
500 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50173513 |
aacaattatgtattctttgcaggccccacagacgagtgctgctcctacttcaacccccccagtgtctgtttcacctcaagctcctgctgcaactgcggca |
50173612 |
T |
|
| Q |
501 |
ccgtgagtgacttgttttacatgacattttcttgagttgtttagatatgtttggttcaattatctttacatatcatgttccatttaaataaactctgaat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50173613 |
ccgtgagtgacttgttttacatgacattttcttgagttgtttagatatgtttggttcaattatctttacatatcatgttccatttaaataaactctgaat |
50173712 |
T |
|
| Q |
601 |
cttcat |
606 |
Q |
| |
|
|||||| |
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|
| T |
50173713 |
cttcat |
50173718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 297 - 606
Target Start/End: Complemental strand, 6158817 - 6158509
Alignment:
| Q |
297 |
tgtgttatgattattgctcatgttactatcatttttgttgttatatttgctgggatatagtaaagaaggatattactcatttacaggaactgaaaacagt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
6158817 |
tgtgttatgattattgctcatgttactatcttttttgttgttatatttgctgggatgtagtaaagaaggatattacccctttacaggaactgaaaacagt |
6158718 |
T |
|
| Q |
397 |
atctaacaattatgtattctttgcaggtcccacagacgagtgctgctcctacttcaannnnnnnagtgtctgtttcacctcaagctcctgctgcaactgc |
496 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |
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|
| T |
6158717 |
atctaacaattatgtattctttgcaggccccacagacgagtgctgctcctactttaacccccc-agtggctgtttcacctcaagctcctgctgcaactgc |
6158619 |
T |
|
| Q |
497 |
ggcaccgtgagtgacttgttttacatgacattttcttgagttgtttagatatgtttggttcaattatctttacatatcatgttccatttaaataaactct |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6158618 |
ggcaccgtgagtgacttgttttacatgacattttcttgagttgtttagatatgtttggttcaattatctttacatatcatgttccatttaaataaactct |
6158519 |
T |
|
| Q |
597 |
gaatcttcat |
606 |
Q |
| |
|
||||||||| |
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|
| T |
6158518 |
taatcttcat |
6158509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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