View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18696_low_13 (Length: 247)
Name: NF18696_low_13
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38083462 - 38083708
Alignment:
| Q |
1 |
aacgacaactttgaatgacatcacaagttagctaaactatcagtacatttattagtttctcggaaaatatgcttaattctggcctcatgatcttcttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38083462 |
aacgacaactttgaatgacatcacaagttagctaaactatcagtacatttattagtttctcggaaaatatgcttaattttggcctcatgatcttcttatt |
38083561 |
T |
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| Q |
101 |
gggaacaacaagacctcacccattagtcgcgcttacatccttgccctacaaacaatcaactacattaattttagaatccataagaagcctcctacatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38083562 |
gggaacaacaagacctcacccattagtcgcgcttacatacttgccctacaaacaatcaactacattaactttagaatccataagaagcctcctacatgtt |
38083661 |
T |
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| Q |
201 |
aaatatctttttcttgtgaattgaaggccctcttatcatctactcct |
247 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38083662 |
aaatatctttttcttgtgaattgaagaccctcttatcatctactcct |
38083708 |
T |
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