View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18696_low_2 (Length: 583)
Name: NF18696_low_2
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Complemental strand, 38119050 - 38118495
Alignment:
| Q |
16 |
atgagtgcactggcacagtattcttcataatggggttcaccaaattataattttttgggtctttgttcgcatcaaactttccctttccatatccaagtac |
115 |
Q |
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| T |
38119050 |
atgagtgcactggcacagtattcttcataatggggttcaccaaattataattttttgggtctttgttcgcatcaaactttccctttccatatccaagtac |
38118951 |
T |
|
| Q |
116 |
ccaaaaatcatgtccatgaagatgccaaggatgtgtctcactattatttttattcatagtgtttgcattttgaagtataatatccacagttgtattgaac |
215 |
Q |
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| T |
38118950 |
ccaaaaatcatgtccatgaagatgccaaggatgtgtctcactgttatttttattcatagtgtttgcattttgaagtataatatccacagttgtattgaac |
38118851 |
T |
|
| Q |
216 |
ttcagtctataaattccattgctagaagtagcatttgtgttgttagccacgctgaaaatatcataattattaaaatcatagccatcaggtggaggtgttt |
315 |
Q |
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| T |
38118850 |
ttcagtctataaattccattgctagaagtagcatttgtgttgttagccacactgaaaatatcataattattaaaatcatagccatcaggtggaggtgttt |
38118751 |
T |
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| Q |
316 |
ggttgaattcaccagttatattctctttaagtgcaacaagataaggggtgtgaggaaggaaaaatgatacgttgttaacagaccaatgacgaacattgtc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118750 |
ggttgaattcaccagttatattctctttaagtgcaacaagataaggggtgtgaggaaggaaaaatgatacgttgttaacagaccaatgacgaacattgtc |
38118651 |
T |
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| Q |
416 |
tatagtgttttgtgtgttgagcaaaactatgactctatctgaggttgttggaggtttgattgtgtaattttggtgagctttgattgcaaggctttgagta |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118650 |
tatagtgttttgtgtgttgagcaaaactatgactctatctgaggttgttggaggtttgattgtgtaattttggtgagctttgattgcaaggctttgagta |
38118551 |
T |
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| Q |
516 |
tgtcttgactcaacattgtcccaagctggtggaggtggtggagatgttggtggtga |
571 |
Q |
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| T |
38118550 |
tgtcttgactcaacattgtcccaagctggtggaggtggtggagatgttggtggtga |
38118495 |
T |
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