View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18696_low_4 (Length: 433)
Name: NF18696_low_4
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 29161592 - 29161316
Alignment:
| Q |
6 |
ttgaggcagcaaaattgggacatttgattagtgagaggaagaatgtgaatgcttggtgggagaaaatttctagtaggccagcttggaagaagttgaagga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29161592 |
ttgaggcagcaaaattgggacatttgattagtgagaggaagaatgtgaatgcttggtgggagaaaatttctagtaggccagcttggaagaagttgaagga |
29161493 |
T |
|
| Q |
106 |
attggctaagtaataaggagatcttgtcctatcctaatcatatataacttatgtatttgaattgtattatgaatatgtatgtttataaaataatgattat |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
29161492 |
attggctaagtaagaaggagatcttgtcctatcctattcatatataacttatgtatttgaattgt-ttatgaatatgtatgtttatcaaataatgattat |
29161394 |
T |
|
| Q |
206 |
taaacaataaaaattttaaactactatacaccgatagaccatattttgttttgtatgataccatatccgatatctact |
283 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29161393 |
taaacaataaagtttttcaactactatacaccgatagaccatattttgttttgtatgataccatatcagatatctact |
29161316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 321 - 433
Target Start/End: Complemental strand, 29161312 - 29161200
Alignment:
| Q |
321 |
attttattaatcaaacgacggtaacttcctcaatccaaacaaaaccagttagagaagaaatgacaaactttactaaaaaatgtgccgcttgattattctc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
29161312 |
attttattaatcaaacgacggtaacttcctcaatccaaacaaaaccagttagagaagaaatgacaaactttactaaataatatgccgcttgattagtctc |
29161213 |
T |
|
| Q |
421 |
acgacgagtgtac |
433 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29161212 |
acgacgagtgtac |
29161200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 5141593 - 5141670
Alignment:
| Q |
350 |
tcaatccaaacaaaaccagttagagaagaaatgacaaactttactaaaaaatgtgccgcttgattattctcacgacga |
427 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| ||| |||||||||| |
|
|
| T |
5141593 |
tcaatccaaacaaaatcagttagagaagaaatggcaaactttgctaaataatgtgccgcttaattggcctcacgacga |
5141670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 5141514 - 5141550
Alignment:
| Q |
309 |
ttgaaataactgattttattaatcaaacgacggtaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |
|
|
| T |
5141514 |
ttgaaataactgattttattaatcaaacaatggtaac |
5141550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University