View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18696_low_6 (Length: 410)
Name: NF18696_low_6
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 10086852 - 10086519
Alignment:
| Q |
18 |
gttatgagcagaaccaaaagccctagctaaacaaagagagaaggaaaagtcaccctctccaacaaagaggattttgtgttttgatgagtagtgttttttc |
117 |
Q |
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| T |
10086852 |
gttatgagcagaaccaaaagccctagctaaacaaagagagaaggaaaagtcaccctctccaacaaagaggattttgtgttttgatgagtagtgttttttc |
10086753 |
T |
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| Q |
118 |
cattttgctgtgtttgatgatggttcttct------------gattcttgttcttcatcatcagtgtcagtgttaatgttaatgttaagttgaagatgat |
205 |
Q |
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| T |
10086752 |
cattttgctgtgtttgatgatggttcttctgactctgattcagattcttgttcttcatcatcagtgtcagtgttaatgttaatgttaagttgaagatgat |
10086653 |
T |
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| Q |
206 |
catgttgtttttgtattggactcattttgattttgatcaattgatatt--------catagattatggaaaatgattttcactaccgaccctaatgacca |
297 |
Q |
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| T |
10086652 |
catgttgtttttgtattggactcattttgattttgatcaattgatattcaatgatgcatagattatggaaaatgattttcactaccgaccctaatgacca |
10086553 |
T |
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| Q |
298 |
atcgttactttatgaaagaaacaaagttgaaaac |
331 |
Q |
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| T |
10086552 |
atcgttactttatgaaagaaacaaagttgaaaac |
10086519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 10086533 - 10086487
Alignment:
| Q |
346 |
aacaaagttgaaaactttattctatggagtctctctacatacctcac |
392 |
Q |
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| T |
10086533 |
aacaaagttgaaaactttattctacggtgtctctctacatacctcac |
10086487 |
T |
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