View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18696_low_8 (Length: 334)
Name: NF18696_low_8
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18696_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 27034994 - 27034671
Alignment:
| Q |
1 |
ttttctttgtcttaaccttccaatttcaagaggaaatggttcctgacttcctataaatcccgagtttggcaaagaggtgaataaagtatgacaacttatt |
100 |
Q |
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| T |
27034994 |
ttttctttgtcttaaccctccaatttcaagaggaaatggttcctgacttcctataaatcctgagttcggcaaagaggtgaataaagtacgacaacttatt |
27034895 |
T |
|
| Q |
101 |
gttccaaccaaagcttgaacttgggtactctgatcgatttgactttcgttggaactcattaatcatttgaacctaacctcttaattcaaaatactactat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27034894 |
gttccaaccaaagcttgaactcgggtactctgatcgatttgactttcgttggaactcattaatcatttgaacctaacctcttaattcagaatactactat |
27034795 |
T |
|
| Q |
201 |
tacttatgacacaagatatgaaagattgacaattacaaaaagataaattttctctatagtagaagatgtatctagtgtctgacgtgtgtcagtgtcgtgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
27034794 |
tacttatgacacaagatatgaaagattgacaattacaaaaagataaattttctctatagtagaagatgtatctggtgtctgacgtgtgtca--gtcgtgt |
27034697 |
T |
|
| Q |
301 |
tcgatgccaatgcctgtgtctgtgct |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
27034696 |
tcgatgccaatgcctgtgtctgtgct |
27034671 |
T |
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