View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18696_low_9 (Length: 293)

Name: NF18696_low_9
Description: NF18696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18696_low_9
NF18696_low_9
[»] chr2 (2 HSPs)
chr2 (80-291)||(12416355-12416568)
chr2 (80-291)||(12428415-12428628)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 80 - 291
Target Start/End: Original strand, 12416355 - 12416568
Alignment:
Q  80 aagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggttttttgc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12416355 aagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggttttttgc 12416454  T
Q  180 cataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaactattggat 279  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  12416455 catagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaactattggat 12416554  T
Q  280 g--atgtccatctc 291  Q
    |  |||||||||||    
T  12416555 gctatgtccatctc 12416568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 80 - 291
Target Start/End: Original strand, 12428415 - 12428628
Alignment:
Q  80 aagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggttttttgc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12428415 aagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggttttttgc 12428514  T
Q  180 cataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaactattggat 279  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  12428515 catagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaactattggat 12428614  T
Q  280 g--atgtccatctc 291  Q
    |  |||||||||||    
T  12428615 gctatgtccatctc 12428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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