View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_high_18 (Length: 236)
Name: NF18697_high_18
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 22949568 - 22949649
Alignment:
| Q |
136 |
caagttaactttattctatgcaagcgattagacctgcttagtaaattttaatggaattaatgtagagtaacgttgtaaataa |
217 |
Q |
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| T |
22949568 |
caagttaactttattctatgcaagcgattagacctgcttagtaaattttaatggaattaatgtagagtaacgttgtaaataa |
22949649 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 22949442 - 22949504
Alignment:
| Q |
10 |
tagattatactttgaaagtttttgttatttaactaataaaatattttcgtttgaaatgaaatc |
72 |
Q |
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| T |
22949442 |
tagattatactttgaaagtttttgttatttaactaataaaatattttcgtttgaaatgaaatc |
22949504 |
T |
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