View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_low_1 (Length: 1065)
Name: NF18697_low_1
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 24 - 815
Target Start/End: Complemental strand, 51978772 - 51977959
Alignment:
| Q |
24 |
gaagccttattccactaagtggggtttgtccataatacgcttaactatttattgcaaagagtgaaataggtagaatgaaatnnnnnnncagttaagggta |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51978772 |
gaagccttattccactaagtggggtttgtccataatacccttaactatttattgcaaagagtgaaataggtagaatgaaataaaaaaacagttaagggta |
51978673 |
T |
|
| Q |
124 |
ttatagaaaaatgacaaataataccatcaaaagcaacaaaatttattagttttctaagtatgtgtcaataatcttaaaatgaaaactaaggagggagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51978672 |
ttatagaaaaatgacaaataataccatcaaaagtaacaaaatttattagttttctaagtatgtgtcaataatcttaaaatgaaaactaaggagggagtaa |
51978573 |
T |
|
| Q |
224 |
a----------------------tgttagcttagtgatccatgctacaaaacactgaaacagtaaccagactctaataccacattaagaagtctcgactt |
301 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51978572 |
acgaaaactaaggagggagtaaatgttagcttagtgatccaagctacaaaacactgaaacagtaaccagactctaataccacattaagaagtctcgactt |
51978473 |
T |
|
| Q |
302 |
tcaaatcataagctgagggcaggaaatgaagtgcgggtactctttagagtccctatgctagatactggttcataatcttggaagaaaagaagccctgtca |
401 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51978472 |
tcgaatcataagctgagggcaggaaatgaagtgcgggtactctttagagtccctatgatagataccggttcataatcttggaagaaaagaagccctgtca |
51978373 |
T |
|
| Q |
402 |
gtgtaagctgtctttattgttgtaccaatatgcagccagtgagtaaggaaaaaataacacagataaacactacagtggcaaatcttccgtttattcaata |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51978372 |
gtgtaagctgtctttattgttgtaccaatatgcagccagtgagtaaggaaaaaataacacagataaacactacagtggcaaatcttccgtttattcaata |
51978273 |
T |
|
| Q |
502 |
gaattggcatctaccaacatattaagttccccaatcaaaatactagtgttgttaaatagcggatgtagcggccctataacataattttatcaataatgtt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
51978272 |
gaattggcatctaccaacatattaagttccccaatcaaaataccagtgttgttaaatagcggatttagcggccctataacgtaattttatcaataatgtt |
51978173 |
T |
|
| Q |
602 |
ccgaaataccctggttggtacaaaatgttgtcaaacagtggcgttatattgtgtatcggaattttatcaaaccactattttacgtgatctgcaattgaca |
701 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
51978172 |
ccgaaataccctggttagtacaaaatgttgtcaaacagtggcattatattgtgtatcagaattttatcaaaccactattttacgtgatttaaaattgaca |
51978073 |
T |
|
| Q |
702 |
acactgcaaaatccccattcattctttccttcggatataaatcaattaaaggcatgaattcattatttgcttagttgatatgatttttcgtaactttagc |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51978072 |
acactgcaaaatccccattcattctttccttcggatataaatccattaaaggcatgaattcattatttgcttagttgatatgatttctcgtaactttagc |
51977973 |
T |
|
| Q |
802 |
attttagttttaac |
815 |
Q |
| |
|
|||||||||||||| |
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|
| T |
51977972 |
attttagttttaac |
51977959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 861 - 1032
Target Start/End: Complemental strand, 51977942 - 51977771
Alignment:
| Q |
861 |
gaatgcaaaaaccagtgcatcccttccttatctttctcaccgtaataacaccattcttcaacttccataaaaggtcatctcaatttttcattaccaataa |
960 |
Q |
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|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51977942 |
gaatgcaaaaaccagtgcaccgcttccttatctttctcaccgtaataacaccattcttcaacttccataaaaggtcatctcaatttttcattaccaataa |
51977843 |
T |
|
| Q |
961 |
cagagtatacacgtacgtgtttctaatactttccatttctcgcaagaatccaaatttacaacagcaatccgt |
1032 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
51977842 |
cagagtatacacgtatgtgtttctaagactttccatttctcgcaagaatccaacttaacaacagcaatccgt |
51977771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 34284179 - 34284263
Alignment:
| Q |
115 |
ttaagggtattatagaaaaatgacaaataataccatcaaaagcaacaaaatttattagttttctaagtatgtgtcaataatctta |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| |||| ||| ||||| |||| |
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| T |
34284179 |
ttaagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttattagttttctcggtatatgtaaataacctta |
34284263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 30268552 - 30268634
Alignment:
| Q |
120 |
ggtattatagaaaaatgacaaataataccatcaaaagcaacaaaatttattagttttctaagtatgtgtcaataatcttaaaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||| | |||||||| |||| ||||||| |
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|
| T |
30268552 |
ggtattatagaaaaaagacaaataattccaccaaaagtaacaaaatttattagttttattggtatgtgtaaatagccttaaaa |
30268634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 42537328 - 42537401
Alignment:
| Q |
115 |
ttaagggtattatagaaaaatgacaaataataccatcaaaagcaacaaaatttattagttttctaagtatgtgt |
188 |
Q |
| |
|
|||| |||||||||| |||| ||||||||| | |||||||| ||||| | ||||||||||||| |||||||| |
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| T |
42537328 |
ttaatggtattataggaaaaaaacaaataattcaatcaaaagtaacaacacttattagttttcttggtatgtgt |
42537401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 16021964 - 16022027
Alignment:
| Q |
139 |
aaataataccatcaaaagcaacaaaatttattagttttctaagtatgtgtcaataatcttaaaa |
202 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||| ||||||| ||||||||| ||||||||||||| |
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|
| T |
16021964 |
aaataattccataaaaagtaacaaaatttattggttttctcagtatgtgtaaataatcttaaaa |
16022027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 660 - 708
Target Start/End: Complemental strand, 38766757 - 38766709
Alignment:
| Q |
660 |
gaattttatcaaaccactattttacgtgatctgcaattgacaacactgc |
708 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
38766757 |
gaatttgaacaaaccgctattttacgcgatctgcaattgacaacactgc |
38766709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 3763305 - 3763213
Alignment:
| Q |
63 |
cttaactatttattgcaaagagtgaaataggtagaatgaaatnnnnnnncagttaagggtattatagaaaaatgacaaataataccatcaaaag |
156 |
Q |
| |
|
||||||||||||||| | | || |||||||||||||||| || ||||||| |||||||||||||| |||||||||| |||||||||| |
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|
| T |
3763305 |
cttaactatttattggagatagagaaataggtagaatgatataataaat-agttaagagtattatagaaaaaagacaaataattccatcaaaag |
3763213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 8087017 - 8087070
Alignment:
| Q |
48 |
tttgtccataatacgcttaactatttattgcaaagagtgaaataggtagaatga |
101 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
8087017 |
tttgtcaataatatccttaactatttattgcaaagagagaaatagatggaatga |
8087070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 660 - 709
Target Start/End: Original strand, 27720473 - 27720522
Alignment:
| Q |
660 |
gaattttatcaaaccactattttacgtgatctgcaattgacaacactgca |
709 |
Q |
| |
|
|||||| | |||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
27720473 |
gaatttgaacaaaccactattttccatgatccgcaattgacaacactgca |
27720522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 1392080 - 1392133
Alignment:
| Q |
117 |
aagggtattatagaaaaatgacaaataataccatcaaaagcaacaaaatttatt |
170 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||||| |||| | |||||| |
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|
| T |
1392080 |
aagggtgttatagaaaaaagacaaataattccatcaaaagtaacagagtttatt |
1392133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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