View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_low_10 (Length: 325)
Name: NF18697_low_10
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 42800744 - 42801037
Alignment:
| Q |
18 |
aattagaaccaaatgattactacatttaagatgtgaatacgtgtggggatttggagagtagttaagtatttttaatgaggtgacaaagatatgtcaaaaa |
117 |
Q |
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| T |
42800744 |
aattagaaccaaatgattactacatttaagatgtgaatacgtgtggggatttggagagtagttaagtatttttaatgaggtgacaaagatatgtcaaaaa |
42800843 |
T |
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| Q |
118 |
gattgaacaagatttttgatgggcaagcaaagcagcttaagttcttcactgat-attttctgacgtacataccctacattagagccacacgcatttgact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42800844 |
gattgaacaagatttttgatgggcaagcaaagcagcttaagttcttcactgatgattttctgacgtacataccctacattagagccacacgcttttgact |
42800943 |
T |
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| Q |
217 |
cttgataaatattgaatggtgccattaacaaaacaacataactcaagttttggaacatcctttcaatcgaattcattccattcaaaaagtataa |
310 |
Q |
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| T |
42800944 |
cgagagaaatattgaatggtgccattaacaaaacaacataactcaagttttggaacatcctttcaatcgaattcattccattcaaaaagtataa |
42801037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 42791321 - 42791367
Alignment:
| Q |
97 |
gtgacaaagatatgtcaaaaagattgaacaagatttttgatgggcaa |
143 |
Q |
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| T |
42791321 |
gtgacaaagatatatggaaaagattgaacaagatttttgatgtgcaa |
42791367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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