View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18697_low_12 (Length: 270)

Name: NF18697_low_12
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18697_low_12
NF18697_low_12
[»] chr7 (6 HSPs)
chr7 (88-257)||(46651281-46651450)
chr7 (88-257)||(46173327-46173496)
chr7 (90-253)||(46642151-46642314)
chr7 (1-90)||(46651137-46651226)
chr7 (153-256)||(46638483-46638586)
chr7 (153-253)||(46619768-46619868)
[»] chr1 (1 HSPs)
chr1 (117-257)||(15768539-15768679)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 46651281 - 46651450
Alignment:
Q  88 cacaaacatttttgctggcaacgagaaagctagaagaccgagagaatcttagtttgtctgatcccaaacctcctgaagaattctcagttatgcagctttt 187  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46651281 cacaaacatttttgttggcaacgagaaagctagaagactgagagaatcttagtttgtctgatcccaaacctcctgaagaattctcagttatgcagctttt 46651380  T
Q  188 ctctgccttggcacaagcagtcaatctcctcattttaataggaacagctgcatgattagaatcacctgat 257  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  46651381 ctctgccttggcacaagcagtcaatcttctccttttaataggaacaactgcatgattagaatcacctgat 46651450  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 46173327 - 46173496
Alignment:
Q  88 cacaaacatttttgctggcaacgagaaagctagaagaccgagagaatcttagtttgtctgatcccaaacctcctgaagaattctcagttatgcagctttt 187  Q
    |||||||||||  | |||||||  ||||||||||||| ||||| | || |||||| |||||||||| ||||||||||||||||||| | |||||||||||    
T  46173327 cacaaacatttgggttggcaactcgaaagctagaagatcgagaaattcgtagtttatctgatcccagacctcctgaagaattctcaatgatgcagctttt 46173426  T
Q  188 ctctgccttggcacaagcagtcaatctcctcattttaataggaacagctgcatgattagaatcacctgat 257  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||| |||||||||    
T  46173427 ctcttccttggcacaatcagtcaatctcctccttttaataggaacaactgcatgatcagagtcacctgat 46173496  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 46642151 - 46642314
Alignment:
Q  90 caaacatttttgctggcaacgagaaagctagaagaccgagagaatcttagtttgtctgatcccaaacctcctgaagaattctcagttatgcagcttttct 189  Q
    |||||||||| | ||||| |  |||||||||||||  |||||||||  ||||| || |||||||||||| |||||||||||||||| |||  |||||| |    
T  46642151 caaacattttggttggcatcttgaaagctagaagaatgagagaatcccagtttatccgatcccaaacctactgaagaattctcagtgatgtggctttttt 46642250  T
Q  190 ctgccttggcacaagcagtcaatctcctcattttaataggaacagctgcatgattagaatcacc 253  Q
    |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  46642251 ctgccttgacacaagcagttaatctcctccttttaataggaacagctgcatgattagaatcacc 46642314  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 46651137 - 46651226
Alignment:
Q  1 tgaccacttcatcgtcattaggtgtagaataaccacatgtatattgataatttccgttgcaaatgctcttatctttattctcttccacac 90  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  46651137 tgaccacttcatcgtcattaggtgcagaataatcatatgtatattgataattgccgttgcaaatgctcttttctttattctcttccacac 46651226  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 46638586 - 46638483
Alignment:
Q  153 aaacctcctgaagaattctcagttatgcagcttttctctgccttggcacaagcagtcaatctcctcattttaataggaacagctgcatgattagaatcac 252  Q
    |||| ||||||||||||||||   |||| |||||||||||  ||| |||||||||||||| |||||  |||||||||||| |||||||||||||||||||    
T  46638586 aaacatcctgaagaattctcaacaatgcggcttttctctgatttgacacaagcagtcaatttcctccgtttaataggaacggctgcatgattagaatcac 46638487  T
Q  253 ctga 256  Q
    ||||    
T  46638486 ctga 46638483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 46619868 - 46619768
Alignment:
Q  153 aaacctcctgaagaattctcagttatgcagcttttctctgccttggcacaagcagtcaatctcctcattttaataggaacagctgcatgattagaatcac 252  Q
    |||| ||||||||||||||||   ||||  ||||||||||  |||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||    
T  46619868 aaacatcctgaagaattctcaacaatgcgacttttctctgatttggcacaagcagtcaatttcctccgtttaataggaacggctgcatgattagaatcac 46619769  T
Q  253 c 253  Q
    |    
T  46619768 c 46619768  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 15768539 - 15768679
Alignment:
Q  117 ctagaagaccgagagaatcttagtttgtctgatcccaaacctcctgaagaattctcagttatgcagcttttctctgccttggcacaagcagtcaatctcc 216  Q
    ||||||||| |||| ||||  || || ||||||||||||||||||||||||||||||   |||| |||||||||| |||||||||||||||||||||| |    
T  15768539 ctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggcacaagcagtcaatcttc 15768638  T
Q  217 tcattttaataggaacagctgcatgattagaatcacctgat 257  Q
    || |||||||||||||| ||| || |||||| |||||||||    
T  15768639 tccttttaataggaacaactgtattattagagtcacctgat 15768679  T

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