View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_low_23 (Length: 236)
Name: NF18697_low_23
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40399132 - 40399315
Alignment:
| Q |
1 |
aaggttgtgtaagccagtttggatcgatcatccctgacgcaatgctagcttcctctaatctattcacatgtgtctcttggagaaagttgttcgagttagg |
100 |
Q |
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| T |
40399132 |
aaggttgtgtaagccagtttggatcgatcatccctgatgcaatgctagcttcctctaatctactcacatgtgtcccttggagaaagttgttcgagttagg |
40399231 |
T |
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| Q |
101 |
attagagggaaatttgaaaccctaattcaccatataaaggctaactaatagccttctcctaagtacacatttttccatcccaaaaacaccacacattt |
198 |
Q |
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| T |
40399232 |
attagagggaaatttgaaaccctaattcaccat--------------atagccttctcctaagtacacatttttccatcccaaaaacaccacacattt |
40399315 |
T |
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