View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18697_low_24 (Length: 233)
Name: NF18697_low_24
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_24 |
 | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0125 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20919 - 21143
Alignment:
| Q |
1 |
ttgaatatgattttaaagggatagtttgttgagaccatttgatatgatactgttagtcggttgagtctgtttcaatccacggagtaatgtatttttatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
20919 |
ttgaatatgattttaaagggatagtttgttgagaccatttgatttgatactattggtcggttgagtctgtttcaatccacagagtaatgactttttttgt |
21018 |
T |
|
| Q |
101 |
tgactatatttctaaagggataatttttcgggttaacttattttgaagattctaatcgtaaaaattcgagttatgcttcattcttaatcttattatgttc |
200 |
Q |
| |
|
||| |||||||||||||||||||||| || |||||||||||| |||||||||| || ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
21019 |
tgattatatttctaaagggataatttgtcaggttaacttattctgaagattctgattgtaaaaattcgagttctgattcattcttaatcttattatgttc |
21118 |
T |
|
| Q |
201 |
-atccaacggtgggattgatttgat |
224 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
21119 |
tatccaatggtgggattgatttgat |
21143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 19946965 - 19946848
Alignment:
| Q |
105 |
tatatttctaaagggataatttttcgggttaacttattttgaagattctaatcgtaaaaattcgagttatgcttcattcttaatcttattatg-ttcatc |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||| | ||||| |||||||||||| || ||| |||||||||||||| | || ||| |
|
|
| T |
19946965 |
tatatttctaaagggataatttgtcgggttaagttattctgaagattgtgatcgtcaaaattcgagttctgattcgttcttaatcttatttggttttatc |
19946866 |
T |
|
| Q |
204 |
caacggtgggattgattt |
221 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
19946865 |
caacggtgagattgattt |
19946848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 12820237 - 12820354
Alignment:
| Q |
105 |
tatatttctaaagggataatttttcgggttaacttattttgaagattctaatcgtaaaaattcgagttatgcttcattcttaatcttattatg-ttcatc |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||| | ||||| |||||||||||| || ||| ||||||||||||||| | || ||| |
|
|
| T |
12820237 |
tatatttctaaagggataatttgtcgggttaagttattctgaagattgtgatcgtcaaaattcgagttctgattcgttcttaatcttattaggttttatc |
12820336 |
T |
|
| Q |
204 |
caacggtgggattgattt |
221 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
12820337 |
caacggtaagattgattt |
12820354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University