View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_low_4 (Length: 564)
Name: NF18697_low_4
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 25306519 - 25306101
Alignment:
| Q |
16 |
aatatttaaatccaatttcacattttttgttatgaaattcaagttgatctcttaaactttctctccaatctttctagtgatcgagtggtggttattttca |
115 |
Q |
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| T |
25306519 |
aatatttaattccaatttcacattgtttgttatgaaattcaagttgatctcttaaactttctctccaatctttctagtgatcgagtggtggttattttca |
25306420 |
T |
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| Q |
116 |
ctacacccatttaggtccnnnnnnnnnatcactagatactaagcttataattattgacattcagtgtgcaattcatcttcttgattggttt--------- |
206 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25306419 |
ctacgcccatttaggtcctttttttt-atcactagatactaagcttataattattgacattcagtgtgcaattcatcttcttgattggttttttattcaa |
25306321 |
T |
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| Q |
207 |
----------aaaatcaatcttgatgacttaacgctcactgacgatgaagggttgtgttttgaactagaggaagagagtgaggtagggaattatccgaat |
296 |
Q |
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| T |
25306320 |
aattgtgtttaaaatcaatcttgatgacttaacgcttactgacgatgaagggctgtgttttgaactagaggaagagagtgaggtagggaattatccgaat |
25306221 |
T |
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| Q |
297 |
ttgtgtttggtgagccgttttccggtgaatcaaccctttaagatgaaacccatgaaggtgtgtatgcctgaagtgtggcggctgatgaaggttgtgccgg |
396 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |
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| T |
25306220 |
ttgtgtttggtgaggcgttttccggtgaatcaaccctttaagatgaaacccatgaaggtgtgtatgcctgaagtgtggcggatgatgaaggttgtggcag |
25306121 |
T |
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| Q |
397 |
taaaggagactttccttggt |
416 |
Q |
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| T |
25306120 |
taaaggagactttccttggt |
25306101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 415 - 548
Target Start/End: Complemental strand, 25304630 - 25304497
Alignment:
| Q |
415 |
gtgtatcatataagactttaatgatgttgtatctcaacaagataagcttggagtccatgcacatccaaattggttgtgtaatggattttgtgaagacgtt |
514 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25304630 |
gtgtatcatataagactttaatgaccttgtatctcaacaagataagcttcgagtccatgcacatccaaattggttgtgtaatggattttgtgaagatgtt |
25304531 |
T |
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| Q |
515 |
aacgattgtgatttgtctgatattaagttgaagg |
548 |
Q |
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| T |
25304530 |
aacgattgtgatttgtctgatattaagctgaagg |
25304497 |
T |
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