View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_low_6 (Length: 484)
Name: NF18697_low_6
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_6 |
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| [»] scaffold1221 (1 HSPs) |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold1221 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold1221
Description:
Target: scaffold1221; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 188 - 471
Target Start/End: Complemental strand, 2363 - 2080
Alignment:
| Q |
188 |
atataattattaacatttcagcatgtctcttttcataaatattccctactggtgaatgttttgttaattcaattaaatttattatgatttgtttgaagat |
287 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2363 |
atatcattaataacatttcagcatgtctcttttcataaacattccctactggtgaatgttttgttaattcaattaaatttattatgatttgtttgaagat |
2264 |
T |
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| Q |
288 |
ttagtcctgtttagagttaatttgcaagctaataaaaatgaattacattccctacatgtaaattatttgaatgggatgcacacaaggcttttgatgagaa |
387 |
Q |
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| T |
2263 |
ttagtcctgtttagagttaaattgcaagctaataaaaatgaattacattccctacatgtaaattatttgaataggatgcacacaaggtttttgatgagaa |
2164 |
T |
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| Q |
388 |
ggtgaagattgatcaagttcacaaagctttgaaatttttgaagtaaacttgtgtagtttggccttatattgcttctgaagtatt |
471 |
Q |
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| T |
2163 |
ggtgaagattgatcatgttcacaaagctttgaaatttttgaagtcaacttgtgtagtttggccttatattgcttctgaagtatt |
2080 |
T |
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Target: scaffold0044 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 9082 - 8919
Alignment:
| Q |
20 |
tctatcttaatacaaaatttgacaccatgggttctctgtttcaagttcattcttattcattttgctcgccatctttcggcaaaaggacataagcttaaga |
119 |
Q |
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| T |
9082 |
tctatcttaatgcaaaatttgacactatgggttctctgtttcaagttcattcttattcattttgctcgccatctatcggcaaaaggacataagcttaaaa |
8983 |
T |
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| Q |
120 |
gcactccaaaagtgacttgatgtatctattgctgctggagaggactgcatagatagattatgat |
183 |
Q |
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| T |
8982 |
gcactccaaaagggacttgatgtatctattgctgctggaaaggactgcatagatagattatgat |
8919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 47475942 - 47476115
Alignment:
| Q |
20 |
tctatcttaatacaaaatttgacaccatgggttctctgtttcaagttcattcttattcattttgctcgccatctttcggcaaaaggacataagcttaaga |
119 |
Q |
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| T |
47475942 |
tctatcttaatgcaaaatttgacaccatgcattctctatttcaagttcattcctaatcattttgttcgccgtcttttgttgtaaggatagaagtttaaga |
47476041 |
T |
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| Q |
120 |
gcactccaaaagtgacttgatgtatctattgctgctggagaggactgcatagatagattatgataaaaatataa |
193 |
Q |
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| T |
47476042 |
gcactccaaaagggatttaatatatctattgttgtgggacaggaccacatagatagattacaataaaaatataa |
47476115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 47476172 - 47476213
Alignment:
| Q |
245 |
gttttgttaattcaattaaatttattatgatttgtttgaaga |
286 |
Q |
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| T |
47476172 |
gttttgttaattcaattaagtttattatgatttgtttgaaga |
47476213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 16709531 - 16709645
Alignment:
| Q |
360 |
gggatgcacacaaggcttttgatgagaaggtgaag---attgatcaagttcacaaagctttgaaatttttgaagtaaacttgtgtagtttggccttatat |
456 |
Q |
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| T |
16709531 |
gggatgcacaaaaggctattgatgagaagcagaagaagattgatcatgcccacaaagctttgaaacttttgaagccgacttgtgtagtttggcctaatat |
16709630 |
T |
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| Q |
457 |
tgcttctgaagtatt |
471 |
Q |
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| T |
16709631 |
tgcttccgaagtatt |
16709645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 34314621 - 34314693
Alignment:
| Q |
258 |
aattaaatttattatgatttgtttgaagatttagtcctgtttagagttaatttgcaagctaataaaaatgaat |
330 |
Q |
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| T |
34314621 |
aattaaattaagtatgatttgtttgaagatttagtcttatttagagttaatttacacgctaataaatatgaat |
34314693 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 21600754 - 21600697
Alignment:
| Q |
394 |
gattgatcaagttcacaaagctttgaaatttttgaagtaaacttgtgtagtttggcct |
451 |
Q |
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| T |
21600754 |
gattgatcatgttcacaaagccttgaaacttttgaagccaacttgtgcagtttggcct |
21600697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 14566912 - 14566877
Alignment:
| Q |
258 |
aattaaatttattatgatttgtttgaagatttagtc |
293 |
Q |
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| T |
14566912 |
aattaaattaattatgatttgtttgaagatttagtc |
14566877 |
T |
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