View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18697_low_8 (Length: 414)
Name: NF18697_low_8
Description: NF18697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18697_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 25813739 - 25813361
Alignment:
| Q |
19 |
caagaatggggacaatcagatgaaaatattcagcaaacagttgatgttataagcttcctaacagcaaggttaatacatataatatttgtacattttttca |
118 |
Q |
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| T |
25813739 |
caagaatggggacaatcagatgaaaatattcagcaaacagttgatgttataagcttcctaacagcaaggttaatacatatactatttgtacattttttca |
25813640 |
T |
|
| Q |
119 |
taataatccacacattatatgtttcaaattgatactttacttaccacatttatcatatatttctatgcgtcgacgcaggtatacaaaaaaccctagtcta |
218 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25813639 |
taataatccatacatcatatgtttcaaattgatactttacttaccacatttatcatatatttctatgcgtcg---caggtatacaaaaaaccctagtcta |
25813543 |
T |
|
| Q |
219 |
tatgcagttgaactcttaaacgaacctctctctccgggtgtaaccctagagaccttaaacaagtactacaaggctggttacgacgcggtgtgtaaacact |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25813542 |
tatgcagttgaactcttaaacgaacctctctctccaggtgtaaccctagagaccataaacaagtactacaaggctggttacgacgcggtgcgtaaacact |
25813443 |
T |
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| Q |
319 |
ccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttat |
400 |
Q |
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| T |
25813442 |
ccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttat |
25813361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 192 - 400
Target Start/End: Original strand, 25759103 - 25759318
Alignment:
| Q |
192 |
cgcaggtatacaaaaaaccctagtctatatgcagttgaactcttaaacgaacctctctctc--cgggtgtaaccctagagaccttaaacaagtactacaa |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25759103 |
cgcaggtatacaaaaaaccctagtctatatgcagttgaactcttaaacgaacctctctctctccaagtgtaaccctagagaccttaaacaagtactacaa |
25759202 |
T |
|
| Q |
290 |
g-----gctggttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctc |
384 |
Q |
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| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25759203 |
gctaaggctggttacggcgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctc |
25759302 |
T |
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| Q |
385 |
ttgccaatggtcttat |
400 |
Q |
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|||||||||||||||| |
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| T |
25759303 |
ttgccaatggtcttat |
25759318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 195 - 400
Target Start/End: Complemental strand, 25788642 - 25788442
Alignment:
| Q |
195 |
aggtatacaaaaaaccctagtctatatgcagttgaactcttaaacgaacctctctctccgggtgtaaccctagagaccttaaacaagtactacaaggctg |
294 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
25788642 |
aggtatacaaaaaaccctagtctatat-----tgaactcttaaacgaacctctctctccaggtgtaaccctagagaccataaacaagtactacaaggctg |
25788548 |
T |
|
| Q |
295 |
gttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatgg |
394 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
25788547 |
gttactacgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaagaccctcagaacccaaggaactctttcctcttgccaatgg |
25788448 |
T |
|
| Q |
395 |
tcttat |
400 |
Q |
| |
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|||||| |
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|
| T |
25788447 |
tcttat |
25788442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 12405522 - 12405424
Alignment:
| Q |
302 |
cgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttat |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12405522 |
cgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttat |
12405424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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