View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18698_low_1 (Length: 404)
Name: NF18698_low_1
Description: NF18698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18698_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 4797972 - 4798091
Alignment:
| Q |
78 |
ggtcttgatgaagtagtttaagcaatttcgtggcaaaaaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtatcc |
177 |
Q |
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| T |
4797972 |
ggtcttgatgatgtagta-aagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgtccatgaagctgacacagtgtttgtatct |
4798070 |
T |
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| Q |
178 |
atcaatactccgacaaaaact |
198 |
Q |
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| T |
4798071 |
atcaataaactgacaaaaact |
4798091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 4803964 - 4803905
Alignment:
| Q |
116 |
accttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtat |
175 |
Q |
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| T |
4803964 |
accttgtcttcaacactgatgttgaaaaacatgtctatgaagctgacattgtgtttgtat |
4803905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 10779356 - 10779297
Alignment:
| Q |
116 |
accttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtat |
175 |
Q |
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| T |
10779356 |
accttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtat |
10779297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 4829399 - 4829271
Alignment:
| Q |
76 |
ctggtcttgatgaagtagtttaagcaatttcgtggcaaaaaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtat |
175 |
Q |
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| T |
4829399 |
ctggtcttgatgatgtagca-aagcaatttcgtggcaagaac-ttttcttcagctatgatgttaaaaaatatgtctacgaagctgacatagtgtttgtat |
4829302 |
T |
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| Q |
176 |
ccatcaatactccgacaaaaactcgcggtct |
206 |
Q |
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| T |
4829301 |
ctgttgatacactgacaaaaactcgcggtct |
4829271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 4794005 - 4793967
Alignment:
| Q |
349 |
atccagcatgctctctacatgtcatttgaaggggttaat |
387 |
Q |
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| T |
4794005 |
atccaccatgctctctacatgtcatttgaaggggttaat |
4793967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 4807518 - 4807416
Alignment:
| Q |
115 |
aaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtatccatcaatactccgacaaaaactcgcggtctaagagttg |
214 |
Q |
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| T |
4807518 |
aaccttttcttcagaattgatgttgaaaaacatgtttatgaatttgacataggttttgtatccgtcaacacgctgactataactcgcggtcttggagttg |
4807419 |
T |
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| Q |
215 |
gca |
217 |
Q |
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||| |
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| T |
4807418 |
gca |
4807416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 18937650 - 18937541
Alignment:
| Q |
109 |
ggcaaaaaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtatccatcaatactccgacaaaaactcgcggtctaa |
208 |
Q |
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| T |
18937650 |
ggcaaaaaccttttctttagcattgatgttgaaaagcatttctacgaagttgacattgttattgtatccgtcaacacaacgactagaacttgcggtctag |
18937551 |
T |
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| Q |
209 |
gagttggcaa |
218 |
Q |
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| T |
18937550 |
gagttggcaa |
18937541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 19327215 - 19327181
Alignment:
| Q |
115 |
aaccttttcttcagcactgatgttgagaaacatgt |
149 |
Q |
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| T |
19327215 |
aaccttttcttcagcactgatgttgagaaacatgt |
19327181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 3665100 - 3665024
Alignment:
| Q |
97 |
aagcaatttcgtggcaaaaaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgt |
173 |
Q |
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| T |
3665100 |
aagcaatgccgtggcaagaacctcttcttcagcacagatgttgaaaagcatgtctttgaggccgacatagtgtttgt |
3665024 |
T |
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