View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18698_low_2 (Length: 270)

Name: NF18698_low_2
Description: NF18698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18698_low_2
NF18698_low_2
[»] chr1 (1 HSPs)
chr1 (17-252)||(49771272-49771507)
[»] chr5 (1 HSPs)
chr5 (81-252)||(19153766-19153940)
[»] chr7 (2 HSPs)
chr7 (81-252)||(6930321-6930501)
chr7 (177-220)||(38679339-38679382)
[»] chr4 (4 HSPs)
chr4 (81-252)||(506389-506569)
chr4 (81-252)||(18042061-18042241)
chr4 (144-252)||(4528904-4529013)
chr4 (114-142)||(18343626-18343654)
[»] chr3 (2 HSPs)
chr3 (81-252)||(17223693-17223873)
chr3 (114-142)||(13226972-13227000)
[»] scaffold0008 (1 HSPs)
scaffold0008 (81-252)||(265154-265334)
[»] chr6 (1 HSPs)
chr6 (114-252)||(14542886-14543031)
[»] scaffold0625 (1 HSPs)
scaffold0625 (114-142)||(8634-8662)
[»] scaffold0002 (2 HSPs)
scaffold0002 (114-142)||(163715-163743)
scaffold0002 (114-142)||(190647-190675)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 49771272 - 49771507
Alignment:
Q  17 tatcatttaatagagaattgatgtaaactctatcatttaatagataatcctaatcaatgattattaacattattgttctcatctcttagagaactggaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  49771272 tatcatttaatagagaattgatgtaaactctatcatttaatagataatcctaatcaatgattattaacattattgttcccatctcttagagaactgtaca 49771371  T
Q  117 tgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacgatatttatctcgtgatatacccataggatatagaagattta 216  Q
    | ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49771372 taagattttcacctcatacggctcctgaaaagccttaagtgagtataagaaccgagacgatatttatctcgtgatatacccataggatatagaagattta 49771471  T
Q  217 aatccaaggaacatttatgaattagaccaattcaat 252  Q
    |||||||||||||||||||| |||||||||||||||    
T  49771472 aatccaaggaacatttatgagttagaccaattcaat 49771507  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 19153766 - 19153940
Alignment:
Q  81 taacattattgttctcatctct--tagagaactggacatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-t 177  Q
    |||||||| ||||| |||||||  || ||||| | |||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |    
T  19153766 taacattactgttcccatctctattacagaaccgtacatgagattttcacctcgtacggctcctggaaagccttaagtaaatctaaggaccgacatgatt 19153865  T
Q  178 atttatctcgtgatatacccataggatatagaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
     |||||||||||||||| ||||| ||||||||||||||||||| |   |||  || |||||||||||||||||||    
T  19153866 ctttatctcgtgatatatccataagatatagaagatttaaatctatcaaacggttctgaattagaccaattcaat 19153940  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 6930501 - 6930321
Alignment:
Q  81 taacattattgttctcatctct--tagagaactggacatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-t 177  Q
    |||||||| ||||| |||||||  || ||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||| |    
T  6930501 taacattactgttcccatctctaatacagaaccgtacatgagattttcacctcatacggctcctggaaagccttaagtaaatctaaggaccgggacgatt 6930402  T
Q  178 atttatctcgtgat------atacccataggatatagaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
     |||||||||||||      ||| ||||| ||||||||||||||||||| |   |||  || |||||||||||||||||||    
T  6930401 ctttatctcgtgatatatccatatccataagatatagaagatttaaatctatcaaacggttctgaattagaccaattcaat 6930321  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 38679382 - 38679339
Alignment:
Q  177 tatttatctcgtgatatacccataggatatagaagatttaaatc 220  Q
    ||||||||||||||||||  |||| |||||||||||||||||||    
T  38679382 tatttatctcgtgatatattcataagatatagaagatttaaatc 38679339  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 506569 - 506389
Alignment:
Q  81 taacattattgttctcatctct--tagagaactggacatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-t 177  Q
    |||||||| ||||| |||||||  || ||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||| |    
T  506569 taacattactgttcccatctctattacagaaccgtacatgagattttcacctcatacggctcctggaaagccttaagtaaatctaaggaccgggacgatt 506470  T
Q  178 atttatctcgtgat------atacccataggatatagaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
     |||||||||||||      ||| ||||| ||||||||||||||||||| |   |||  || |||||||||||||||||||    
T  506469 ctttatctcgtgatatatccatatccataagatatagaagatttaaatctatcaaacggttctgaattagaccaattcaat 506389  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 18042061 - 18042241
Alignment:
Q  81 taacattattgttctcatctct--tagagaactggacatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-t 177  Q
    |||||||| ||||| |||||||  || ||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||| |    
T  18042061 taacattactgttcccatctctattacagaaccgtacatgagattttcacctcatacggctcctggaaagccttaagtaaatctaaggaccgggacgatt 18042160  T
Q  178 atttatctcgtgat------atacccataggatatagaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
     |||||||||||||      ||| ||||| ||||||||||||||||||| |   |||  || |||||||||||||||||||    
T  18042161 ctttatctcgtgatatatccatatccataagatatagaagatttaaatctatcaaacggttctgaattagaccaattcaat 18042241  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 4528904 - 4529013
Alignment:
Q  144 gaaagccttaagtaagtataagaaccgagacgat-atttatctcgtgatatacccataggatatagaagatttaaatccaaggaacatttatgaattaga 242  Q
    ||||||||||||||| | |||| ||  ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |  ||||  || |||||||||    
T  4528904 gaaagccttaagtaaatctaaggactaagacgattatttatctcgtgatatatccataagatatagaagatttaaatctatcgaacggttctgaattaga 4529003  T
Q  243 ccaattcaat 252  Q
    ||||||||||    
T  4529004 ccaattcaat 4529013  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 18343626 - 18343654
Alignment:
Q  114 acatgagattttcacctcatacggctcct 142  Q
    |||||||||||||||||||||||||||||    
T  18343626 acatgagattttcacctcatacggctcct 18343654  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 17223693 - 17223873
Alignment:
Q  81 taacattattgttctcatctct--tagagaactggacatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-t 177  Q
    |||||||| ||||| |||||||  || ||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||| |    
T  17223693 taacattactgttcccatctctattacagaaccgtacatgagattttcacctcatacggctcctggaaagccttaagtaaatctaaggaccgggacgatt 17223792  T
Q  178 atttatctcgtgat------atacccataggatatagaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
     |||||||||||||      ||| ||||| ||||||||||||||||||| |   |||  || |||||||||||||||||||    
T  17223793 ctttatctcgtgatatatccatatccataagatatagaagatttaaatctatcaaacggttctgaattagaccaattcaat 17223873  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 13227000 - 13226972
Alignment:
Q  114 acatgagattttcacctcatacggctcct 142  Q
    |||||||||||||||||||||||||||||    
T  13227000 acatgagattttcacctcatacggctcct 13226972  T

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Target: scaffold0008 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 265154 - 265334
Alignment:
Q  81 taacattattgttctcatctct--tagagaactggacatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-t 177  Q
    |||||||| ||||| |||||||  || ||||| | |||| |||||||||||||||||||||||||||||||||||||||| | |||| |||| || || |    
T  265154 taacattactgttcccatctctattacagaaccgtacataagattttcacctcatacggctcctggaaagccttaagtaaatctaaggaccgggaggatt 265253  T
Q  178 atttatctcgtgatatacc------cataggatatagaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
     |||||||||||||||| |      |||| ||||||||||||||||||| |   |||| || |||||||||||||||||||    
T  265254 ctttatctcgtgatatatccatattcataagatatagaagatttaaatctatcaaacaattctgaattagaccaattcaat 265334  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 14543031 - 14542886
Alignment:
Q  114 acatgagattttcacctcatacggctcctggaaagccttaagtaagtataagaaccgagacga-tatttatctcgtgat------atacccataggatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||| | |||||||||||||      ||| ||||| |||||    
T  14543031 acatgagattttcacctcatacggctcctggaaagccttaagtaaatctaaggaccgggacgattctttatctcgtgatatatccatatccataagatat 14542932  T
Q  207 agaagatttaaatccaaggaacatttatgaattagaccaattcaat 252  Q
    |||||||||||||| |   |||  || |||||||||||||||||||    
T  14542931 agaagatttaaatctatcaaacggttctgaattagaccaattcaat 14542886  T

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Target: scaffold0625 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 8634 - 8662
Alignment:
Q  114 acatgagattttcacctcatacggctcct 142  Q
    |||||||||||||||||||||||||||||    
T  8634 acatgagattttcacctcatacggctcct 8662  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 163743 - 163715
Alignment:
Q  114 acatgagattttcacctcatacggctcct 142  Q
    |||||||||||||||||||||||||||||    
T  163743 acatgagattttcacctcatacggctcct 163715  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 190675 - 190647
Alignment:
Q  114 acatgagattttcacctcatacggctcct 142  Q
    |||||||||||||||||||||||||||||    
T  190675 acatgagattttcacctcatacggctcct 190647  T

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