View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_high_11 (Length: 358)
Name: NF18699_high_11
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 33594399 - 33594069
Alignment:
| Q |
15 |
acatgaggatgaagaaattaagacccatcaagtcaccagagctgtttcaaaatttccattaatttcatatccaatcattcacattcccatgccttaaatc |
114 |
Q |
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| T |
33594399 |
acatgatgatgaagaaattaagacccatcaagtcaccagagctgtttcacaatttccattaatttcatatccaatcattcacattcccatgccttaaatc |
33594300 |
T |
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| Q |
115 |
tacaccccttctatcatcatcaatcaaataaaaatagtacatgtcttagatcatatacaaatcttaaatgaagcaaattattttcctccacatgtacata |
214 |
Q |
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| T |
33594299 |
gacacccctact---atcatcaatcaaataaaaatagtacaagtctcagatc--atacaaatcttaaatgaagcaaattattttcctccacatgtacata |
33594205 |
T |
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| Q |
215 |
caaataagataacagtaacttgctnnnnnnntagataacagtaacaaaaa--taatatcatgtcatatcatatatacactataattttgtatgtggaaaa |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594204 |
caaataagataacagtaacttgctaaaaaaatagataacagtaacaaaaaataaatatcatgtcatatcatatatacactataattttgtatgtggaaaa |
33594105 |
T |
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| Q |
313 |
caccatagaaaagggataacaagtttgtcgtctctg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33594104 |
caccatagaaaagggataacaagtttgtcgtctctg |
33594069 |
T |
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