View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_high_13 (Length: 328)
Name: NF18699_high_13
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 15345221 - 15345531
Alignment:
| Q |
1 |
aacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaatt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |
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| T |
15345221 |
aacgcaaatataaaccctaaaaaccttatgtatggaacatgaatcaggagttagcgctgaagaaggtaacagaacttacaagaattgaaaacggagaatt |
15345320 |
T |
|
| Q |
101 |
ggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctac |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15345321 |
ggagaagaacatagagtttggaggccgtcgagagcgaacgtgacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctccccctac |
15345420 |
T |
|
| Q |
201 |
tgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaaaaactagaac--ggggggagaaaaactggactgaataatgaagga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||| |
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| T |
15345421 |
tgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccggcgaaaaactagaacagggggagagagaaactggactgaataatgaagga |
15345520 |
T |
|
| Q |
299 |
gaggatagaag |
309 |
Q |
| |
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||||||||||| |
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| T |
15345521 |
gaggatagaag |
15345531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 40504240 - 40504550
Alignment:
| Q |
1 |
aacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
40504240 |
aacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaacttacaagaatcgaaaatggagaatt |
40504339 |
T |
|
| Q |
101 |
ggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctac |
200 |
Q |
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|||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40504340 |
ggagaagaacggtgagtttgaaggctgtcgagagcgaacgagacgtgatacaaagagagatagagagtcgcgagcatcaataacccctttctcaccctac |
40504439 |
T |
|
| Q |
201 |
tgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaaaaactagaac--ggggggagaaaaactggactgaataatgaagga |
298 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||| || |
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| T |
40504440 |
tgaattgattgaagaaggtaaagtgattgaatgcaaaattcttctcgccggcgaaaaactagaacagggggagagagaaactggactgaataatgaacga |
40504539 |
T |
|
| Q |
299 |
gaggatagaag |
309 |
Q |
| |
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||||| ||||| |
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| T |
40504540 |
gaggaaagaag |
40504550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 24706251 - 24705961
Alignment:
| Q |
1 |
aacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
24706251 |
aacgcaaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacaaaacttacaagaatcgaaaacagagaatt |
24706152 |
T |
|
| Q |
101 |
ggagaagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctac |
200 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24706151 |
ggagaagaacagagagtttgaaggccgtcgagagcgaacgagacgtgagacaaagagagatagagagtcgcgagcatcaataacccctttttcaccctac |
24706052 |
T |
|
| Q |
201 |
tgaattgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaaaaactagaac--ggggggagaaaaactggactgaat |
289 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||| |||| |||| |||||||||||||| |
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| T |
24706051 |
tgaattgattgaagaaggtaaagtgattgatggcaaaattcttctcgccggcaaaaaactagaacagggggagagagaaactggactgaat |
24705961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 22107962 - 22107721
Alignment:
| Q |
5 |
caaatataaaccctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggag |
104 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
22107962 |
caaatataaaccctaataaccttttgtatggaatatgaatcaggagttagcgttgaagaaggtgacataacttacaagaatcgaaaacggagaattggag |
22107863 |
T |
|
| Q |
105 |
aagaacagggagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaa |
204 |
Q |
| |
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||||||| ||||||| |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22107862 |
aagaacaaagagtttgaaggccgacgagagcgaacgagacgtgagacaaaaagagata---------gagcatcaataacccctttctcaccctactgaa |
22107772 |
T |
|
| Q |
205 |
ttgattgaagaaggtaaagttattgaaggcaaaattcttctcgccgacgaa |
255 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||||| |||| |
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|
| T |
22107771 |
ttgattgaagaaggtaaagtgattgaaggcgaaattcttctcgccggcgaa |
22107721 |
T |
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