View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18699_high_6 (Length: 493)
Name: NF18699_high_6
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 44368140 - 44368559
Alignment:
| Q |
19 |
actagtacattttattttatttttaaactcaaatgaaaatcagaaattttaagaggggattatatactttcatcaccaaatcaacctttgaaggtttcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44368140 |
actagtacattttattttatttttaaactcaaatgaaaatcagaaattttaagaggggattatttactttcatcaccaaatcaacctttgaaggtttcat |
44368239 |
T |
|
| Q |
119 |
taactacacgaatcaattagtatttgattatatatacaagatattgattaaa-cattcacgcaaaacatgggatggattactaagcattgtattcggact |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44368240 |
taactacacgaatcaatta---tttgattatatatacacgatattgattaaaacattcacgcaaaacatgtgatggattactaagcattgtattcggact |
44368336 |
T |
|
| Q |
218 |
gtgtcattatccataacccataattagtgattaataattatccgggtagggaaaacatttttcttgaatttaatttattccagataattaatgagataaa |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44368337 |
gtgtcattatccataacccatacc---------ataattatccgggtagggaaaacatttttcttgaatttaatttattcctgataattaatgagataaa |
44368427 |
T |
|
| Q |
318 |
ttgggaagggatggaaattagtggaccttattaattgccaataggggtacgagattgatattttatgttaacaaaccattgtgagctgaatattcaattg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44368428 |
ttgggaagggatggaaattagtggaccttattaattgccaataggggtacgagattgatattttatgttaacaaaccattgtgagctgaataatcaattg |
44368527 |
T |
|
| Q |
418 |
gttgatgtgacaaatcagaaaaagataatgct |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44368528 |
gttgatgtgacaaatcagaaaaagataatgct |
44368559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 44368577 - 44368621
Alignment:
| Q |
439 |
aagataatgctaaaaaacaaacttgggtgtgttagactattcttctc |
485 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44368577 |
aagataatgctaaaaaacaaacttgg--gtgttagactattcttctc |
44368621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University