View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_high_9 (Length: 388)
Name: NF18699_high_9
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 372
Target Start/End: Original strand, 25811428 - 25811797
Alignment:
| Q |
6 |
caaaggatcaaaaaagttttcagtgaaactttgtgatgaatgaattttagagagaaaatgaatgttaaacctcaatgaatggataattgggatttacata |
105 |
Q |
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| T |
25811428 |
caaaggatcaaaaaagttttcagtgaaactttgtgatgaatgaattttagagagaaaatgaatgttaaacctcaatgaatggataattgcggtttacata |
25811527 |
T |
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| Q |
106 |
ggaagaggaatggaagnnnnnnnn---caattatgatgcattaaaacttgaagnnnnnnnnttacaagttgataagaatcacaccttataggtcaattca |
202 |
Q |
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| T |
25811528 |
ggaagaggaatggaaagaaaaaaaaaacaattatgatgcattaaaacttgaagaaaaaaaattacaagttgataagaatcacaccttataggtcaattca |
25811627 |
T |
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| Q |
203 |
aatcaccttaagataataattcggatcatgactcaaatcaatattttcaccaagttgatttgaattacccttcaacatatgattcaaatcacccgagcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25811628 |
aatcaccttaagataataattcggatcatgactcaaatcaatattttcaccaagttgatttgaattacccttcaacatatgattcaaatcacccgagcat |
25811727 |
T |
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| Q |
303 |
gatccaaatcacccttcagaagatgattgaaatcatccttcaacataactaaaatcacgaaatcctaaat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25811728 |
gatccaaatcacccttcagaagatgattgaaatcatccttcaacataactaaaatcacgaaatcctaaat |
25811797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 28378335 - 28378402
Alignment:
| Q |
20 |
agttttcagtgaaactttgtgatgaatgaattttagagagaaaa-tgaatgttaaacctcaatgaatg |
86 |
Q |
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|||||||| || |||||||||||||| ||| ||||||||||||| ||| | ||||| ||||||||||| |
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| T |
28378335 |
agttttcaatggaactttgtgatgaaagaagtttagagagaaaagtgatttttaaaactcaatgaatg |
28378402 |
T |
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