View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18699_low_1 (Length: 700)

Name: NF18699_low_1
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18699_low_1
NF18699_low_1
[»] chr4 (3 HSPs)
chr4 (298-676)||(35202593-35202971)
chr4 (21-271)||(35202322-35202572)
chr4 (38-153)||(22483403-22483518)
[»] chr2 (2 HSPs)
chr2 (21-171)||(3945850-3946000)
chr2 (38-172)||(39741065-39741199)
[»] chr1 (2 HSPs)
chr1 (26-170)||(24878851-24878995)
chr1 (38-171)||(34645998-34646131)
[»] chr5 (1 HSPs)
chr5 (38-127)||(13481037-13481126)
[»] chr3 (2 HSPs)
chr3 (38-172)||(41895808-41895942)
chr3 (26-172)||(34976123-34976269)
[»] chr8 (2 HSPs)
chr8 (26-165)||(28437319-28437458)
chr8 (21-126)||(5211208-5211313)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 298 - 676
Target Start/End: Original strand, 35202593 - 35202971
Alignment:
Q  298 ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202593 ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg 35202692  T
Q  398 ttcaattctacaagagtttcaagttcttcttctggttatgatcatcttcagcagcagcagcctcaggtgaatggtcttggattaggtttttcatctgggg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202693 ttcaattctacaagagtttcaagttcttcttctggttatgatcatcttcagcagcagcagcctcaggtgaatggtcttggattaggtttttcatctgggg 35202792  T
Q  498 tagttaatcttaatcatcatgatgattacagaaatgggtttggttcaaataataacaactacagttccatctttggttcttctactacttcaactaatga 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  35202793 tagttaatcttaatcatcatgatgattacagaaatgggtttggttcaaataataacaactacagttccatctttggttcttcttctacttcaactaacga 35202892  T
Q  598 taactccatggcctctactactccagttatggcttctctacttaactctacactactgcaacagaaattcatgagtgca 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202893 taactccatggcctctactactccagttatggcttctctacttaactctacactactgcaacagaaattcatgagtgca 35202971  T

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Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 35202322 - 35202572
Alignment:
Q  21 cacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202322 cacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaag 35202421  T
Q  121 aggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaacgtcttaaacgaccaaatcactcctcttcaaatattgatactgctact 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35202422 aggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaacgtcttaaacgaccaaatcactcttcttcaaatattgatactgctact 35202521  T
Q  221 gcttctccttcttcttcaactcctactagtgctaattcaaaccctccttct 271  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35202522 gcttctccttcttcttcaactcctaatagtgctaattcaaaccctccttct 35202572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 22483518 - 22483403
Alignment:
Q  38 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 137  Q
    ||||| ||||| |||||||| || || || ||| | |||||||||||| | ||||||||  | ||||  ||||||||||| | |||||| ||||| || |    
T  22483518 aacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtggtacactaagga 22483419  T
Q  138 acgttcctgttggtgg 153  Q
    | ||||||||||||||    
T  22483418 atgttcctgttggtgg 22483403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 3946000 - 3945850
Alignment:
Q  21 cacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaag 120  Q
    |||||||||| ||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| ||||| || ||| | |||||||||||    
T  3946000 cacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaag 3945901  T
Q  121 aggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaa 171  Q
    |||||| || |||||||| ||||||||||||||||||| ||||| ||||||    
T  3945900 aggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa 3945850  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 39741065 - 39741199
Alignment:
Q  38 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 137  Q
    ||||| ||||||||||| || || ||||| ||| |  | || |||||| | ||||||||| | || | ||| |||||||| | |||||||||| | || |    
T  39741065 aacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagga 39741164  T
Q  138 acgttcctgttggtggtggttgcagaaaaaacaaa 172  Q
    | ||||||||||| ||||| |||||||||||||||    
T  39741165 atgttcctgttggaggtggatgcagaaaaaacaaa 39741199  T

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Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 24878851 - 24878995
Alignment:
Q  26 tgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtg 125  Q
    |||| ||| |||||||| |||||||| ||||| |||||||| || ||| | ||||||||| | || |||||||  || | ||| |||||||||| |||||    
T  24878851 tgtggttcttcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtg 24878950  T
Q  126 gaacacttagaaacgttcctgttggtggtggttgcagaaaaaaca 170  Q
    || | || ||||| ||||||||||||||||| |||||||||||||    
T  24878951 gatccctcagaaatgttcctgttggtggtggctgcagaaaaaaca 24878995  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 34645998 - 34646131
Alignment:
Q  38 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 137  Q
    ||||| ||||| |||||||| || |||||||||||  ||||||||||| | ||||||||| | |||| ||| ||||||||   ||||||| |  ||||||    
T  34645998 aacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaa 34646097  T
Q  138 acgttcctgttggtggtggttgcagaaaaaacaa 171  Q
    || ||||||||||||||||||  |||||||||||    
T  34646098 acattcctgttggtggtggttcaagaaaaaacaa 34646131  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 13481037 - 13481126
Alignment:
Q  38 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtgga 127  Q
    ||||| |||||||| ||||| || |||||||| ||| ||||||||||||| ||||||||| | |||| |||||||||||||| |||||||    
T  13481037 aacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtgga 13481126  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 41895808 - 41895942
Alignment:
Q  38 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 137  Q
    ||||| |||||||||||||| |||||||||||  | |||||||||||  |||| |||||| |||||| ||| ||||||||   ||||||  |  | ||||    
T  41895808 aacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggtattggactgaaggtggttctttaagaa 41895907  T
Q  138 acgttcctgttggtggtggttgcagaaaaaacaaa 172  Q
    | |||||||| ||||||||||  ||||||||||||    
T  41895908 atgttcctgtaggtggtggttcaagaaaaaacaaa 41895942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 34976269 - 34976123
Alignment:
Q  26 tgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtg 125  Q
    ||||||||| |  |||| |||||||| ||||| || || || ||| | || || |||||  ||||||||||  | |||| ||| |||||||| | ||| |    
T  34976269 tgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggtattggaccaaaggag 34976170  T
Q  126 gaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa 172  Q
    |||||||||| ||| | ||||||||||| || || ||||||||||||    
T  34976169 gaacacttaggaacatccctgttggtggaggctgtagaaaaaacaaa 34976123  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 28437319 - 28437458
Alignment:
Q  26 tgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtg 125  Q
    ||||||||  ||||||| |||||||||||||| || ||||| ||| |  | ||||||||||| ||||||||| | || | ||||||||||||||  ||||    
T  28437319 tgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattggacaaatggtg 28437418  T
Q  126 gaacacttagaaacgttcctgttggtggtggttgcagaaa 165  Q
    || |  |  | ||||||||  ||||||||||||| |||||    
T  28437419 gatcgttgcgtaacgttccgattggtggtggttgtagaaa 28437458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 5211313 - 5211208
Alignment:
Q  21 cacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaag 120  Q
    |||||||||| |||   ||||| |||||||| ||||| || ||||| | | | ||||||||| | || || ||||||  ||||||||||||||||||||     
T  5211313 cacgttgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaaactgtaaaagatattggacaaa 5211214  T
Q  121 aggtgg 126  Q
    ||||||    
T  5211213 aggtgg 5211208  T

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