View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_low_11 (Length: 386)
Name: NF18699_low_11
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 1177791 - 1177564
Alignment:
| Q |
19 |
tagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagagg |
118 |
Q |
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| T |
1177791 |
tagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagagg |
1177692 |
T |
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| Q |
119 |
gacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaacgacttcgctggcagacgaattagtatctctatctccaaatctgaccc |
218 |
Q |
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| T |
1177691 |
gacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaacgatttcactggcagatgaagtagtatctctatctccaaatctgagcc |
1177592 |
T |
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| Q |
219 |
taaactcttattattcattctcgctgct |
246 |
Q |
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| T |
1177591 |
taaactcttattattcattctggctgct |
1177564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 6841100 - 6841294
Alignment:
| Q |
18 |
atagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagag |
117 |
Q |
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| T |
6841100 |
atagggaggtctgaat---tcaatgggtctgggaatgatcatgagactatggcctttacggttttcagaattgtgcagtttccacctattcacaaaatat |
6841196 |
T |
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| Q |
118 |
ggacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaacgacttcgctggcagacgaattagtatctctatctccaaatctga |
215 |
Q |
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| T |
6841197 |
ggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaatgattttaccggtagatgaaatagtatctctatctgtaaatctga |
6841294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 1177531 - 1177503
Alignment:
| Q |
276 |
atgttagggttaggttaagccgtttaggt |
304 |
Q |
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| T |
1177531 |
atgttagggttaggttaagccgtttaggt |
1177503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 31104201 - 31104252
Alignment:
| Q |
110 |
caaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaa |
161 |
Q |
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| T |
31104201 |
caaaatagggacttttgatgatattgttccatgatttttgaacacatttgaa |
31104252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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