View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_low_13 (Length: 348)
Name: NF18699_low_13
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 16324400 - 16324491
Alignment:
| Q |
16 |
atgaaatagaatgaagcatcttccaatgtagtatatcgatataattaagaaaaatgaacctttctcttaaaagtggaactattcatcaattc |
107 |
Q |
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| T |
16324400 |
atgaaatagaatgaagcatcttccaatgtagtatatcgatataattaagaaaaatgaacctttctcttaaaagtggaactattcatcaattc |
16324491 |
T |
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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 16324544 - 16324652
Alignment:
| Q |
208 |
ttcataagcgtgaacttgtactaatatcactggtaaatacatcgtaatgtttagttgtttacattgtttagtcatatag-tttttaatgagaaataaagt |
306 |
Q |
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| T |
16324544 |
ttcataagcgtgaacttgtaccaatatcaccggtaaatacatcgtaatgtttagttgtttacattgtttagtcatatagtttttttatgagaaataaagt |
16324643 |
T |
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| Q |
307 |
ttggatgag |
315 |
Q |
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| T |
16324644 |
ttagatgag |
16324652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 16324513 - 16324543
Alignment:
| Q |
162 |
aaagccttttatggtttctcgttcaagacgg |
192 |
Q |
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| T |
16324513 |
aaagccttttatggtttctcgttcaagacgg |
16324543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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