View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_low_18 (Length: 235)
Name: NF18699_low_18
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 28153370 - 28153551
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||| |
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| T |
28153370 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgccctctttgcagagaatcattgagaccaaagagagctatcactga |
28153469 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgttgagta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||| |
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| T |
28153470 |
gcttggagctgaagttcttgaatttaattttttcgccattcgtaaggatcgcgatcgtgatgattggtggctacgctgagta |
28153551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 28148715 - 28148905
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||| |||||||| |
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| T |
28148715 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgccctctttgcagagaatcgttgagaccaaagagagccatcactga |
28148814 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgttgagtatagtataat |
220 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| | ||||||| |||||||||| |
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| T |
28148815 |
gcttggagctgaagttcttgaatttaatttttttgccattcgtaaggatcgtgatcatgatgattggtggttacgttgagcatagtataat |
28148905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 17164403 - 17164582
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
||||||| || ||| ||||||| ||||||||| |||| ||||| |||||||||||||| || ||||| ||||||||||||||| | || || |||||||| |
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| T |
17164403 |
atatgtaccacaaatattgtttagataaatggattggtttcaagaaccacacttgtcccctttgtagagaatcattgagaccagaaagggccatcactga |
17164502 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgttgag |
209 |
Q |
| |
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||||||||||||| ||||| ||||||||||| | ||||||||| ||||| ||||||||||||| ||||| ||||||| |
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| T |
17164503 |
gcttggagctgaaattctttcatttaatttttgtgtcatccgtaatgatcgagatcgtgatgatttttggctacgttgag |
17164582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 17157437 - 17157618
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| || | ||||| |||||||||||||| || || || ||||||||||||||| | || || |||||||| |
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| T |
17157437 |
atatgtatcacaaatattgtttagataaatggattagtttcaagaaccacacttgtcccctttgcagagaatcattgagaccagaaagggccatcactga |
17157536 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgttgagta |
211 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| | ||||| || ||||| |||||||||||||||||||| ||||||||| |
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| T |
17157537 |
gcttggagctgaaattctttcatttaatttttgtgtcatccatagtgatcgagatcgtgatgattggtggctacgttgagta |
17157618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 17161359 - 17161540
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| || | ||||| |||||||||||||| || || || ||||||||||||||| | || || |||||||| |
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| T |
17161359 |
atatgtatcacaaatattgtttagataaatggattagtttcaagaaccacacttgtcccctttgcagagaatcattgagaccagaaagggccatcactga |
17161458 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgttgagta |
211 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| | ||||| || ||||| |||||||||||||||||||| ||||||||| |
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| T |
17161459 |
gcttggagctgaaattctttcatttaatttttgtgtcatccatagtgatcgagatcgtgatgattggtggctgcgttgagta |
17161540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 26399366 - 26399235
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
|||||| ||||| | |||||||||||| ||||||||| ||||| ||| |||||||||| || || || |||||||||||| || || || |||||||| |
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| T |
26399366 |
atatgtttcatagatattgtttggatagatgggttggtttcaagaacaacacttgtccactttgcagagaatcattgagatcaggaagggccatcactga |
26399267 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttt |
161 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||| |
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| T |
26399266 |
gcttggagttgatgttctttcatttaattttt |
26399235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 25229071 - 25228891
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| || | ||||| ||||| ||||||||||| ||||| ||||||||||||||| | ||||| |||||||| |
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| T |
25229071 |
atatgtatcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactga |
25228972 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgttgagt |
210 |
Q |
| |
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|| ||||| ||||||||| |||| |||||| ||||| |||| ||||| |||||||||||||||||||| |||||||| |
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| T |
25228971 |
gcatggagtagaagttctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt |
25228891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 25217258 - 25217082
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| || | ||||| ||||| ||||||||||| ||||| ||||||||||||||| | ||||| |||||||| |
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| T |
25217258 |
atatgtatcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactga |
25217159 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgtt |
206 |
Q |
| |
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|| ||||| ||||||||| |||| |||||| |||||||||| ||| | |||||||||||||||||||| |||| |
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| T |
25217158 |
gcatggagtagaagttctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacgtt |
25217082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 25233798 - 25233622
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagaccaaagagagctatcactga |
129 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| || | ||||| ||||| ||||||||||| ||||| ||||||||||||||| | ||||| |||||||| |
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|
| T |
25233798 |
atatgtatcacaaacattgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactga |
25233699 |
T |
|
| Q |
130 |
gcttggagctgaagttcttgaatttaattttttcgccatccgtaaggatcgtgatcgtgatgattggtggctccgtt |
206 |
Q |
| |
|
|| ||||| ||||||||| |||| |||||| |||||||||| ||| | |||||||||||||||||||| |||| |
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|
| T |
25233698 |
gcatggagtagaagttctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacgtt |
25233622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 19317476 - 19317558
Alignment:
| Q |
30 |
atatgtatcataaaaattgtttggataaatgggttggattcaaaaaccacacttgtcctctctgtagggaatcattgagacca |
112 |
Q |
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|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
19317476 |
atatgtatcatagacattgtttggataaatgggttgctttcaaaaaccacacttgtcctctttgtagagaatcattgagacca |
19317558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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